Gene detail

Detail information of GWHGAAZE004965

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP06636.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M354\|AGD6_ARATH	0	Probable ADP-ribosylation factor GTPase-activating protein AGD6
trEMBL	tr\|A0A068UDS4\|A0A068UDS4_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313\|EMBL:CDP06636.1}
TAIR10	AT3G53710.2	3E-146	ARF-GAP domain 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	279001	284300	+
GWHAAZE00000002	mRNA	279001	284300	+
GWHAAZE00000002	exon	279001	279786	+
GWHAAZE00000002	exon	279881	279970	+
GWHAAZE00000002	exon	283764	284300	+
GWHAAZE00000002	CDS	279001	279786	+
GWHAAZE00000002	CDS	279881	279970	+
GWHAAZE00000002	CDS	283764	284300	+

Transcript Sequence
>GWHTAAZE004971 ATGTCGGCATCACGTCGACTCCGAGAGTTACAATCCCAGCCGGGGAACAAAACCTGCGTCGATTGTTCACAGAAGAATCCACAGTGGGCATCGGTCTCCTACGGTATTTTCATGTGTTTAGAGTGCTCCGGTAAACACCGTGGCCTCGGTGTTCATATCTCGTTCGTCCGATCCGTCACCATGGACTCGTGGTCGGAGATCCAGCTCAAAAAAATGGAATCCGGTGGTAACGAACAGCTCAATCAATTCCTCTCTCAGTACGGTATCCCTAAAGAGACGGATATAGTCACTAAATATAATACAAACGCTGCTTCTGTATATCGAGATCGAATCCAAACCCTAGCTGAAGGTCGACCCTGGCGGGACCCGCCGGTTGTTAAGGAAGGTGGTGCTAATAAGAACAAGAAGCCTCCATTGAGTGGTGGTGGTAAGAGTGGAGGTGGAGGATGGGATAGTTGGGATAGTTTTGATGATGGAGGGGTCAGATCGGGTCCGGATATTAGAAGGAATCAATCTGCGGGGGATTTTAGGAGCGGTGGAGGTGGTGGCGGTGGCGGTGTTCCGGCCAGGTCGAAATCGACTGAGGATATATATACGAGAGCGCAATTGGAGGCTTCGGCTTCAAATAAGGAGAGTTTTTTTGCAAAGAAGATGATGGAGAATGAGTCTAGGCCCGATGGATTGCCGCCGAGTCAAGGGGGAAAGTATGTAGGGTTTGGATCGTCTCCGGCGTCGGCGCTGAGGAATAATGCGCATCAAGGGGATGTGCTTTCAGCTGTTACGCAGGGATTTGGTAGGTTATCTGTAGTTGCTGCATCTGCAGCGCAGTCTGCTGCCAATGTGGTTCAAGTGGGCACAAAGGAACTTACTTCCAAGGTGAGGGAAGGGGGCTATGATCACAAGGTGAATGATACTGTCAATGTTGTCACTGCAAAAACAACAGAGATTGGACAGAGAACATGGGGGATCATGAAAGGGGTGATGGCATTGGCTTCACAGAAAGTTGAAGAATACACGAAAGAAGGTAGCGTCAGCGGTGGGGGCTGGAAGAATGACAGCTGGCAACGAAATGAAAACCAGGGAAATGGGTATTATCAGGAGTTTGGACAGGACTCCAAAGGATGGAATAACTCTCCTAGTGGTGGTGGTAGTGGAGGGGGGCAGCCCTCATCTGGCGGCAACTTTAATTCCACCAGCTCAGCCTCTTGGGATGATTGGGATTCAAACGACAATAATACCAAAGAAGTCTCCACAAAGGGGACCGCACCGTCCCATAATGGGGACAGCTGGGCAGGCTGGGGCGATGCGAAAGATGATGGATACGATAATTTCTACCACAGTGCATCTGATAATAAGTCTGCAGACCACAATGGGAAATCAGTTTCCACTTGGACGGGGGGAGGCTTTCTCTGA

Network for GWHGAAZE004965

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01412.19	ArfGap	5	100	2.20E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12492	ARFGAP1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005096	molecular_function	GTPase activator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	128.018
	SRR3591706	second leaf	57.425
	SRR3591707	mature leaf	41.750
	SRR3591708	Shoot apex	74.320
	SRR3591709	Stem	90.431
	SRR3591710	White floral bud	113.449
	SRR3591711	White flower	88.072
	SRR3591712	Green floral bud	109.159
	SRR3591713	Yellow flower	77.376
SRP173429	SRR8316895	Juvenile bud stage	25.249
	SRR8316896	Juvenile bud stage	32.058
	SRR8316897	Juvenile bud stage	12.846
	SRR8316894	Third green stage	14.682
	SRR8316900	Third green stage	49.276
	SRR8316901	Third green stage	51.109
	SRR8316898	Complete white stage	20.581
	SRR8316899	Complete white stage	63.542
	SRR8316903	Complete white stage	39.252
	SRR8316902	Silver flowering stage	19.983
	SRR8316904	Silver flowering stage	28.701
	SRR8316905	Silver flowering stage	15.822
	SRR8316906	Gold flowering stage	50.092
	SRR8316907	Gold flowering stage	46.102
	SRR8316908	Gold flowering stage	47.469
SRP132670	SRR6706286	Control	83.280
	SRR6706287	Light intensity 50%	85.044
	SRR6706288	Light intensity 20%	83.792
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.901
	CNS0095593	Slightly white alabastrum(diploid) 2	35.246
	CNS0095594	Slightly white alabastrum(diploid) 3	29.631
	CNS0095595	Whole white alabastrum(diploid) 2	34.412
	CNS0095596	Whole white alabastrum(diploid) 3	36.211
	CNS0095597	Whole white alabastrum(diploid) 4	35.727
	CNS0095598	Silvery flower (diploied) 1	25.329
	CNS0095599	Silvery flower (diploied) 2	26.712
	CNS0095600	Silvery flower (diploied) 3	45.801
	CNS0095601	Golden flower (diploid) 1	27.803
	CNS0095602	Golden flower (diploid) 2	41.797
	CNS0095603	Golden flower (diploid) 3	39.350
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.905
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.771
	CNS0095606	Slightly white alabastrum(tetraploid) 3	69.591
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.301
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.790
	CNS0095609	Whole white alabastrum(tetraploid) 3	57.775
	CNS0095610	Silvery flower (tetraploid) 1	57.220
	CNS0095611	Silvery flower (tetraploid) 2	41.405
	CNS0095612	Silvery flower (tetraploid) 3	42.469
	CNS0095613	Golden flower (tetraploid) 1	41.125
	CNS0095614	Golden flower (tetraploid) 2	56.334
	CNS0095615	Golden flower (tetraploid) 3	49.269
CRA001975	CRR073297	Stem 1	42.027
	CRR073298	Stem 2	43.752
	CRR073299	Stem 3	47.389
	CRR073300	Leaf 1	57.654
	CRR073301	Leaf 2	52.531
	CRR073302	Leaf 3	52.801
	CRR073303	Juvenile bud 1	59.586
	CRR073304	Juvenile bud 2	56.374
	CRR073305	Juvenile bud 3	67.885
	CRR073306	Third green 1	70.819
	CRR073307	Third green 2	57.617
	CRR073308	Third green 3	58.805
	CRR073309	Second white 1	43.800
	CRR073310	Second white 2	33.286
	CRR073311	Second white 3	36.568
	CRR073312	Silver flowering 1	33.122
	CRR073313	Silver flowering 2	35.374
	CRR073314	Silver flowering 3	28.020
	CRR073315	Gold flowering 1	13.658
	CRR073316	Gold flowering 2	15.860
	CRR073317	Gold flowering 3	18.019
	CRR073318	Tawny withering 1	46.081
	CRR073319	Tawny withering 2	33.216
	CRR073320	Tawny withering 3	38.887