Detail information of GWHGAAZE004964


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP06637.10unnamed protein product [Coffea canephora]
Swissprottr|Q6RVV4|TIC32_PEA5E-124Short-chain dehydrogenase TIC 32, chloroplastic
trEMBLtr|A0A068UEF4|A0A068UEF4_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313|EMBL:CDP06637.1}
TAIR10AT5G02540.11E-108NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene256905260532-
GWHAAZE00000002mRNA256905260532-
GWHAAZE00000002exon256905257090-
GWHAAZE00000002exon257330257376-
GWHAAZE00000002exon257636257720-
GWHAAZE00000002exon257846257924-
GWHAAZE00000002exon257999258197-
GWHAAZE00000002exon258294258373-
GWHAAZE00000002exon258473258704-
GWHAAZE00000002exon260248260422-
GWHAAZE00000002exon260485260532-
GWHAAZE00000002CDS260485260532-
GWHAAZE00000002CDS260248260422-
GWHAAZE00000002CDS258473258704-
GWHAAZE00000002CDS258294258373-
GWHAAZE00000002CDS257999258197-
GWHAAZE00000002CDS257846257924-
GWHAAZE00000002CDS257636257720-
GWHAAZE00000002CDS257330257376-
GWHAAZE00000002CDS256905257090-
Transcript Sequence

Network for GWHGAAZE004964

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00106.26adh_short692182.30E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11153RDH12 Metabolic pathways map01100
Retinol metabolismmap00830

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.295
SRR3591706second leaf2.074
SRR3591707mature leaf1.523
SRR3591708Shoot apex0.392
SRR3591709Stem0.000
SRR3591710White floral bud0.086
SRR3591711White flower0.000
SRR3591712Green floral bud0.187
SRR3591713Yellow flower0.088
SRP173429 SRR8316895Juvenile bud stage 0.163
SRR8316896Juvenile bud stage 0.195
SRR8316897Juvenile bud stage 0.121
SRR8316894Third green stage 0.119
SRR8316900Third green stage 0.203
SRR8316901Third green stage 0.089
SRR8316898Complete white stage 0.038
SRR8316899Complete white stage 0.018
SRR8316903Complete white stage 0.023
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.036
SRR8316907Gold flowering stage 0.005
SRR8316908Gold flowering stage 0.078
SRP132670SRR6706286Control0.043
SRR6706287Light intensity 50%0.044
SRR6706288Light intensity 20%0.121
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.147
CNS0095593Slightly white alabastrum(diploid) 20.217
CNS0095594Slightly white alabastrum(diploid) 30.039
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.011
CNS0095598Silvery flower (diploied) 10.017
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.033
CNS0095603Golden flower (diploid) 30.022
CNS0095604Slightly white alabastrum(tetraploid) 10.044
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.045
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.034
CNS0095613Golden flower (tetraploid) 10.035
CNS0095614Golden flower (tetraploid) 20.121
CNS0095615Golden flower (tetraploid) 30.053
CRA001975CRR073297Stem 10.263
CRR073298Stem 20.390
CRR073299Stem 30.203
CRR073300Leaf 10.149
CRR073301Leaf 20.175
CRR073302Leaf 30.234
CRR073303Juvenile bud 10.250
CRR073304Juvenile bud 20.027
CRR073305Juvenile bud 30.000
CRR073306Third green 10.059
CRR073307Third green 20.023
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.052
CRR073311Second white 30.098
CRR073312Silver flowering 10.141
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.039
CRR073315Gold flowering 12.170
CRR073316Gold flowering 22.309
CRR073317Gold flowering 31.425
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000