Gene detail

Detail information of GWHGAAZE004897

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008440067.1	1.3378E-116	PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X2 [Cucumis melo]
Swissprot	tr\|Q9SFC6\|GDIR_ARATH	4E-104	Rho GDP-dissociation inhibitor 1
trEMBL	tr\|K4D632\|K4D632_SOLLC	8E-116	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc11g012270.1.1}
TAIR10	AT3G07880.1	4E-83	Immunoglobulin E-set superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	124002942	124005104	-
GWHAAZE00000001	mRNA	124002942	124005104	-
GWHAAZE00000001	exon	124002942	124003022	-
GWHAAZE00000001	exon	124003610	124003734	-
GWHAAZE00000001	exon	124003853	124004071	-
GWHAAZE00000001	exon	124004697	124004763	-
GWHAAZE00000001	exon	124004889	124005104	-
GWHAAZE00000001	CDS	124004889	124005104	-
GWHAAZE00000001	CDS	124004697	124004763	-
GWHAAZE00000001	CDS	124003853	124004071	-
GWHAAZE00000001	CDS	124003610	124003734	-
GWHAAZE00000001	CDS	124002942	124003022	-

Transcript Sequence
>GWHTAAZE004903 ATGGGGTTGGATGAAAATAAGGAGGGAGGTGGTGAAGGGGAGGCTAAAAATAATAATAGAAGTATAGGAGGGGAAGAGTCTAAGGTTGGTGGTGAATCAGGAGAAGAAAATAAGATAAACAGAGAGACGAGTGACGATGAAGAAGATGTTGAGGGCAAGATCCAAGTACAATTGGGGCCTCAATGCACTCTCAAAGAGCAGTTTGAGAAGGATAAGGATGATGAGAGCTTGACGAGGTGGAAAGAACAACTTCTTGGAAGTGTGGATATCAACTCTGTTGGAGAGACTCTAGATCCAGAGGTTAAGATTTTGAGCCTTGCAATTAAGTCCCCGGGTAGAACCGATATATTTCTTCCACTCCCTGAGTCTGGAAATCCAAAAGGCTCGTGGTTTACGTTGAAGGAAGGTTGCCGTTACAGCCTACAATTCACCTTCCAGGTCAGCAATAACATTGTATCTGGCCTCAAATACAGGAACACAGTTTGGAAAACTGGTGTCAAGGTGGACAGCACAAAAGAAATGATTGGAACATTCAGTCCTCAACAAGAACCTTATACACATGAAATGCCGGAAGAGACTACTCCTTCCGGCATGTTTGCTAGAGGAACATACTCAGCTAAAACAAAGTTTCTTGATGATGACAACAAATGTTACTTGGAGATCAACTATAGCTTTGATATTCGGAAAGATTGGCAGTCAACTAATTAA

Network for GWHGAAZE004897

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02115.18	Rho_GDI	43	230	1.40E-82

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12462	ARHGDI, RHOGDI	Vasopressin-regulated water reabsorption	map04962
K12462	ARHGDI, RHOGDI	Neurotrophin signaling pathway	map04722

Gene Ontology

GO term	Ontology	Name
GO:0005737	cellular_component	cytoplasm
GO:0005094	molecular_function	Rho GDP-dissociation inhibitor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.841
	SRR3591706	second leaf	95.802
	SRR3591707	mature leaf	47.177
	SRR3591708	Shoot apex	87.954
	SRR3591709	Stem	18.659
	SRR3591710	White floral bud	40.882
	SRR3591711	White flower	9.704
	SRR3591712	Green floral bud	80.716
	SRR3591713	Yellow flower	2.399
SRP173429	SRR8316895	Juvenile bud stage	20.081
	SRR8316896	Juvenile bud stage	17.962
	SRR8316897	Juvenile bud stage	11.731
	SRR8316894	Third green stage	12.571
	SRR8316900	Third green stage	54.003
	SRR8316901	Third green stage	50.345
	SRR8316898	Complete white stage	4.193
	SRR8316899	Complete white stage	29.644
	SRR8316903	Complete white stage	4.874
	SRR8316902	Silver flowering stage	0.975
	SRR8316904	Silver flowering stage	2.183
	SRR8316905	Silver flowering stage	1.337
	SRR8316906	Gold flowering stage	6.234
	SRR8316907	Gold flowering stage	6.130
	SRR8316908	Gold flowering stage	7.869
SRP132670	SRR6706286	Control	11.036
	SRR6706287	Light intensity 50%	15.348
	SRR6706288	Light intensity 20%	14.226
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.229
	CNS0095593	Slightly white alabastrum(diploid) 2	30.561
	CNS0095594	Slightly white alabastrum(diploid) 3	33.463
	CNS0095595	Whole white alabastrum(diploid) 2	61.365
	CNS0095596	Whole white alabastrum(diploid) 3	60.533
	CNS0095597	Whole white alabastrum(diploid) 4	77.424
	CNS0095598	Silvery flower (diploied) 1	20.664
	CNS0095599	Silvery flower (diploied) 2	14.333
	CNS0095600	Silvery flower (diploied) 3	4.869
	CNS0095601	Golden flower (diploid) 1	11.167
	CNS0095602	Golden flower (diploid) 2	7.406
	CNS0095603	Golden flower (diploid) 3	5.643
	CNS0095604	Slightly white alabastrum(tetraploid) 1	60.232
	CNS0095605	Slightly white alabastrum(tetraploid) 2	64.100
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.977
	CNS0095607	Whole white alabastrum(tetraploid) 1	95.822
	CNS0095608	Whole white alabastrum(tetraploid) 2	105.901
	CNS0095609	Whole white alabastrum(tetraploid) 3	67.448
	CNS0095610	Silvery flower (tetraploid) 1	3.391
	CNS0095611	Silvery flower (tetraploid) 2	5.115
	CNS0095612	Silvery flower (tetraploid) 3	3.041
	CNS0095613	Golden flower (tetraploid) 1	3.975
	CNS0095614	Golden flower (tetraploid) 2	2.422
	CNS0095615	Golden flower (tetraploid) 3	3.667
CRA001975	CRR073297	Stem 1	36.749
	CRR073298	Stem 2	34.227
	CRR073299	Stem 3	28.374
	CRR073300	Leaf 1	55.433
	CRR073301	Leaf 2	37.208
	CRR073302	Leaf 3	34.522
	CRR073303	Juvenile bud 1	39.500
	CRR073304	Juvenile bud 2	29.525
	CRR073305	Juvenile bud 3	15.227
	CRR073306	Third green 1	3.184
	CRR073307	Third green 2	3.539
	CRR073308	Third green 3	1.861
	CRR073309	Second white 1	0.963
	CRR073310	Second white 2	1.378
	CRR073311	Second white 3	1.461
	CRR073312	Silver flowering 1	1.305
	CRR073313	Silver flowering 2	2.660
	CRR073314	Silver flowering 3	1.919
	CRR073315	Gold flowering 1	28.258
	CRR073316	Gold flowering 2	39.850
	CRR073317	Gold flowering 3	26.049
	CRR073318	Tawny withering 1	19.883
	CRR073319	Tawny withering 2	15.433
	CRR073320	Tawny withering 3	26.413