Gene detail

Detail information of GWHGAAZE004888

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006467353.1	0	PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Citrus sinensis]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	0	Serine/threonine-protein kinase HT1
trEMBL	tr\|A0A067JA85\|A0A067JA85_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP20681.1}
TAIR10	AT1G62400.1	2E-180	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	123835405	123838070	+
GWHAAZE00000001	mRNA	123835405	123838070	+
GWHAAZE00000001	exon	123835405	123835776	+
GWHAAZE00000001	exon	123836663	123837118	+
GWHAAZE00000001	exon	123837819	123838070	+
GWHAAZE00000001	CDS	123835405	123835776	+
GWHAAZE00000001	CDS	123836663	123837118	+
GWHAAZE00000001	CDS	123837819	123838070	+

Transcript Sequence
>GWHTAAZE004894 AACAAACCATTGTCGGTCCCTTCATCTTCAAGAACCCGTTTAAATACTGATATGGAGAGCATGGAAAGGAAGAGATTTGATAGTTTGGAGTCATGGTCAATGATATTGGATTCTGAGAATGTGGAGACTTGGGAAGTATCAAAGGAGGATCAAGAAGAATGGACGGCTGATCTTTCTCAGCTCTTTATAGGTAATAAGTTTGCTTCTGGGGCTCATAGTAGAATTTACAGGGGTATTTACAAGCAGAGGGCAGTTGCTGTAAAGATGGTTAGAATTCCAACTCACAAGGAGGAAACTAGGGTTTTGCTTGAACAACAGTTTAAGTCAGAGGTTGCCTTGCTTTCGCGTCTCTATCATCCCAATATTGTGCAGTTCATCGCAGCTTGTAAAAAGCCTCCAGTGTACTGTATAATTACAGAATACATGTCTCAAGGAACTCTAAGGATGTACCTTAACAAGAAAGAGCCATACTCGCTTTCAACTGAAACTATTTTGAGGTTAGCCCTCGATATCTCCAGAGGAATGGAGTATCTTCATTCCCAAGGGGTGATCCACAGAGACCTAAAATCAAATAACTTGCTTCTAAACGACGAGATGCGTGTTAAGGTTGCGGATTTTGGGACGTCGTGCCTAGAAACACAGACGCAGGAATCAAAGGGAAACATGGGAACCTATCGGTGGATGGCTCCGGAGATGGTGAAGGAGAAACCATATACAAGGAAAGTTGATGTTTACAGTTTCGGGATTGTGCTGTGGGAGCTCACAACAGCTTTGCTTCCCTTTCAAGGAATGACCCCTGTTCAGGCTGCTTTTGCTGTGGCTGAGAAGAACGAAAGGCCGCCAATGCCGGCCAGTTGTCAGCCCGCTCTTGCACACCTCATAAAGCGGTGCTGGGCCGCAAACCCTTCTAAGCGCCCAGATTTCGGCGACATTGTATCCGCTTTAGAGAAGTACGATGAATGTGTTAAAGAAGGACTCCCACTCACTCTCCACTCGGGTCTGGTTAACCGAAACGTCATTCTTGAACGCTTGAAAGGCTGCGTACCCATGGGCTCTTCCTCCATACCTGTAAATGCCTGA

Network for GWHGAAZE004888

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	63	315	3.30E-68

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.648
	SRR3591706	second leaf	11.004
	SRR3591707	mature leaf	11.127
	SRR3591708	Shoot apex	11.104
	SRR3591709	Stem	3.526
	SRR3591710	White floral bud	5.133
	SRR3591711	White flower	4.943
	SRR3591712	Green floral bud	8.652
	SRR3591713	Yellow flower	1.537
SRP173429	SRR8316895	Juvenile bud stage	5.176
	SRR8316896	Juvenile bud stage	7.302
	SRR8316897	Juvenile bud stage	3.628
	SRR8316894	Third green stage	4.244
	SRR8316900	Third green stage	10.424
	SRR8316901	Third green stage	11.430
	SRR8316898	Complete white stage	3.411
	SRR8316899	Complete white stage	9.793
	SRR8316903	Complete white stage	5.453
	SRR8316902	Silver flowering stage	2.070
	SRR8316904	Silver flowering stage	1.246
	SRR8316905	Silver flowering stage	1.045
	SRR8316906	Gold flowering stage	1.306
	SRR8316907	Gold flowering stage	0.377
	SRR8316908	Gold flowering stage	0.340
SRP132670	SRR6706286	Control	10.354
	SRR6706287	Light intensity 50%	10.004
	SRR6706288	Light intensity 20%	12.354
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.267
	CNS0095593	Slightly white alabastrum(diploid) 2	7.160
	CNS0095594	Slightly white alabastrum(diploid) 3	4.590
	CNS0095595	Whole white alabastrum(diploid) 2	6.031
	CNS0095596	Whole white alabastrum(diploid) 3	8.048
	CNS0095597	Whole white alabastrum(diploid) 4	6.777
	CNS0095598	Silvery flower (diploied) 1	5.440
	CNS0095599	Silvery flower (diploied) 2	2.670
	CNS0095600	Silvery flower (diploied) 3	12.066
	CNS0095601	Golden flower (diploid) 1	2.450
	CNS0095602	Golden flower (diploid) 2	3.363
	CNS0095603	Golden flower (diploid) 3	2.980
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.105
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.501
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.597
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.953
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.517
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.178
	CNS0095610	Silvery flower (tetraploid) 1	18.490
	CNS0095611	Silvery flower (tetraploid) 2	13.440
	CNS0095612	Silvery flower (tetraploid) 3	1.103
	CNS0095613	Golden flower (tetraploid) 1	2.944
	CNS0095614	Golden flower (tetraploid) 2	3.920
	CNS0095615	Golden flower (tetraploid) 3	0.754
CRA001975	CRR073297	Stem 1	8.783
	CRR073298	Stem 2	10.923
	CRR073299	Stem 3	9.430
	CRR073300	Leaf 1	13.136
	CRR073301	Leaf 2	12.919
	CRR073302	Leaf 3	7.645
	CRR073303	Juvenile bud 1	10.944
	CRR073304	Juvenile bud 2	8.248
	CRR073305	Juvenile bud 3	7.902
	CRR073306	Third green 1	2.515
	CRR073307	Third green 2	2.294
	CRR073308	Third green 3	2.711
	CRR073309	Second white 1	1.137
	CRR073310	Second white 2	2.038
	CRR073311	Second white 3	0.752
	CRR073312	Silver flowering 1	0.325
	CRR073313	Silver flowering 2	0.818
	CRR073314	Silver flowering 3	0.795
	CRR073315	Gold flowering 1	3.557
	CRR073316	Gold flowering 2	7.061
	CRR073317	Gold flowering 3	8.262
	CRR073318	Tawny withering 1	2.214
	CRR073319	Tawny withering 2	1.699
	CRR073320	Tawny withering 3	0.871