Gene detail

Detail information of GWHGAAZE004885

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002264320.1	PREDICTED: EH domain-containing protein 3-like [Vitis vinifera]
trEMBL	tr\|F6HWU0\|F6HWU0_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59154.1}
TAIR10	AT4G05520.1	EPS15 homology domain 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	123794725	123806669	+
GWHAAZE00000001	mRNA	123794725	123806669	+
GWHAAZE00000001	exon	123794725	123794909	+
GWHAAZE00000001	exon	123795468	123795570	+
GWHAAZE00000001	exon	123797033	123797231	+
GWHAAZE00000001	exon	123798992	123799099	+
GWHAAZE00000001	exon	123801672	123801751	+
GWHAAZE00000001	exon	123802072	123802084	+
GWHAAZE00000001	exon	123803264	123803319	+
GWHAAZE00000001	exon	123803403	123803451	+
GWHAAZE00000001	exon	123803536	123803603	+
GWHAAZE00000001	exon	123803923	123804036	+
GWHAAZE00000001	exon	123804187	123804289	+
GWHAAZE00000001	exon	123804399	123804448	+
GWHAAZE00000001	exon	123804775	123804903	+
GWHAAZE00000001	exon	123804998	123805249	+
GWHAAZE00000001	exon	123805354	123805433	+
GWHAAZE00000001	exon	123805913	123806039	+
GWHAAZE00000001	exon	123806160	123806303	+
GWHAAZE00000001	exon	123806398	123806669	+
GWHAAZE00000001	five_prime_UTR	123794725	123794909	+
GWHAAZE00000001	five_prime_UTR	123795468	123795480	+
GWHAAZE00000001	CDS	123795481	123795570	+
GWHAAZE00000001	CDS	123797033	123797231	+
GWHAAZE00000001	CDS	123798992	123799099	+
GWHAAZE00000001	CDS	123801672	123801751	+
GWHAAZE00000001	CDS	123802072	123802084	+
GWHAAZE00000001	CDS	123803264	123803319	+
GWHAAZE00000001	CDS	123803403	123803451	+
GWHAAZE00000001	CDS	123803536	123803603	+
GWHAAZE00000001	CDS	123803923	123804036	+
GWHAAZE00000001	CDS	123804187	123804289	+
GWHAAZE00000001	CDS	123804399	123804448	+
GWHAAZE00000001	CDS	123804775	123804903	+
GWHAAZE00000001	CDS	123804998	123805249	+
GWHAAZE00000001	CDS	123805354	123805433	+
GWHAAZE00000001	CDS	123805913	123806039	+
GWHAAZE00000001	CDS	123806160	123806303	+
GWHAAZE00000001	CDS	123806398	123806583	+
GWHAAZE00000001	three_prime_UTR	123806584	123806669	+

Transcript Sequence
>GWHTAAZE004891 ATCTCATGTTTGTGTTAAATCTTGGCTTGAATTGCTCTGTTTTCAAACTTTGTATATGTTTGTGGCTTTAAAGTAAATTGTTTCTTGCATATAGATATATGCAATTGATGCGGCATCTGGAGCTGCGTTTTTGGCTTTGGATATCTTAGCGAGAGATCATGTCCTTGATCTTTGTGCTGCTCCAGGTGTAATGGAAAGATGGAATTGGTGAAGGAAGAGACATGTTTAAAGCGAAATCTATCTTCTGAGGCATCCATGCTGTGGTGTTTGGAGGTTCTTATGGACGAACCGCACACAGATATACCCATTAGTCATTATCCACTGCCCACATTCGTAACTCACCCAAACACCCACTTTCCATCTCCGACTCTCCGCGGCACAGCCGTCTGCCCGTCTCCCTCTTGGCCTCTCGTCATCTTCCGAGAGTTTCACAGTCCGGCTCCAGCAATGCGACAGTTCGGCCTCCTCTCCCTCAAGCTTTCATCAAGTACAGAAGCCGCCGCTAATTTGTCCAATGCTTGTATATTACCACAACACTCAGCACTTGGATCTGGCGATGCGTTTAAATCAAAAGATTCACACGGAATCAATTACGACGCTGATGGTCGTGTAACCGGAAGTGATGCCACAAAGTTTTTTGCTATGTCGAATTTATCTCGCCCTGAACTCAAGCAGGATTGCGGCTTTGTTGACATGGAACCTTTAGCACCTCCACAGATGGATGGTTTGGAATCCTTAATTGCTAAGAGTAAGACTAAGATTTCAACAACAAATGGCAACGCTGCAGCAAATGGAACTACCCAATTGCAGCCATCACCATCGCCATTACTTAATTTGTTCACTTCAAAGCCTACAAAGAAGACATCTCTCAATGCTGTTACTTCAATAACGGATGGCTTGAAGAGATTATACCTTGAAAAGCTAAAGCCTTTGGAAGTTACTTACCGTTTCCATGATTTTGCATCTCCTTTGTTGACAAATAGTGATTTTGATGCTAAACCCATGGTCATGCTTTTGGGCCAATATTCGACCGGGAAAACCACATTTATTAAACATTTACTTAAGTGCAACTACCCAGGAGCTCACATTGGACCAGAGCCAACAACTGATCGATTTGTTGTCGTTATGACTGGACCTGATGAGAGAAGTATACCAGGAAACACTATTGCTGTTCAGGCAGATATGCCATTTAGCGGTCTGACAACTTTTGGTGGAGCTTTCTTATCTAAATTTGAATGTTCCCAAATGCCACATCCTCTTCTGGAACATATCACATTCGTGGACACTCCTGGGGTTCTTTCGGGAGAGAAACAACGGACCCAACGGAGCTATGATTTTACAGGTGTTATCTCATGGTTTGCAGCAAAATGTGATCTTATTCTCCTTCTCTTTGACCCTCATAAATTGGATATAAGTGATGAATTCAAACGTGTGATTTCATCTTTACGTGGTCACGATGACAAGATCCGCGTAGTCCTTAACAAAGCAGACCAAGTTGACACCCAACAATTGATGAGAGTTTACGGTGCGTTGATGTGGTCGCTCGGGAAGGTTCTAAACACACCGGAGGTTATGCGCGTTTATATTGGGTCTTTCAATGACAAGCCTGTTAATGAAGGTGTAGTTGGTCCCATTGGAAAGGATCTTTTTGAAAAAGAACAAGACGACCTCCTTATAGACTTGACAGACATTCCGAAGAAGGCTTGCGAGCGCAGAATCAATGAGTTTGTTAAACGTGCTAGAGCTGCCAAGATTCATGCCTATATAATCAGCCAGCTCAAAAAGGAGATGCCTGCCATGATGGGTAAAGCTAAGGCGCAGCAGCGCTTGATTGATAATCTTGAAGATGTATTTGCAAAGATCCAGAAGGAGTTCCATCTACCAGCAGGAGATTTTCCGAGTGTGGAAAACTTTAGGGAGGTTCTTGGTGGTTATAGTATTGACAAGTTTGAGAAATTGAAGCCCAAAATGATTCAAGTTGTAGATGACATGCTTGGCTATGATATCCCGGACCTCCTGAAGAATTTCCGAAATCCTTATGAATGATTTGAGATGTTACTACAACAATTAAGAGATAACATTTTGAGAAAAGTTAGAAAGTGAAAAATGTTCTTGCGGATGCATATTTTCAC

Network for GWHGAAZE004885

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16880.6	EHD_N	233	265	1.40E-15
PF00350.24	Dynamin_N	270	429	1.50E-10
PF18150.2	DUF5600	505	606	3.60E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12483	EHD1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.379
	SRR3591706	second leaf	3.982
	SRR3591707	mature leaf	1.879
	SRR3591708	Shoot apex	33.180
	SRR3591709	Stem	13.268
	SRR3591710	White floral bud	19.359
	SRR3591711	White flower	18.721
	SRR3591712	Green floral bud	35.048
	SRR3591713	Yellow flower	15.341
SRP173429	SRR8316895	Juvenile bud stage	20.712
	SRR8316896	Juvenile bud stage	25.872
	SRR8316897	Juvenile bud stage	13.008
	SRR8316894	Third green stage	11.405
	SRR8316900	Third green stage	30.871
	SRR8316901	Third green stage	34.086
	SRR8316898	Complete white stage	16.178
	SRR8316899	Complete white stage	40.499
	SRR8316903	Complete white stage	20.679
	SRR8316902	Silver flowering stage	14.581
	SRR8316904	Silver flowering stage	18.317
	SRR8316905	Silver flowering stage	8.315
	SRR8316906	Gold flowering stage	19.622
	SRR8316907	Gold flowering stage	18.863
	SRR8316908	Gold flowering stage	17.379
SRP132670	SRR6706286	Control	26.824
	SRR6706287	Light intensity 50%	29.712
	SRR6706288	Light intensity 20%	32.055
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.558
	CNS0095593	Slightly white alabastrum(diploid) 2	41.713
	CNS0095594	Slightly white alabastrum(diploid) 3	33.846
	CNS0095595	Whole white alabastrum(diploid) 2	30.987
	CNS0095596	Whole white alabastrum(diploid) 3	35.280
	CNS0095597	Whole white alabastrum(diploid) 4	30.135
	CNS0095598	Silvery flower (diploied) 1	23.265
	CNS0095599	Silvery flower (diploied) 2	19.702
	CNS0095600	Silvery flower (diploied) 3	22.077
	CNS0095601	Golden flower (diploid) 1	18.270
	CNS0095602	Golden flower (diploid) 2	17.122
	CNS0095603	Golden flower (diploid) 3	15.357
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.003
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.167
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.909
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.217
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.809
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.937
	CNS0095610	Silvery flower (tetraploid) 1	22.644
	CNS0095611	Silvery flower (tetraploid) 2	22.424
	CNS0095612	Silvery flower (tetraploid) 3	19.358
	CNS0095613	Golden flower (tetraploid) 1	15.873
	CNS0095614	Golden flower (tetraploid) 2	19.896
	CNS0095615	Golden flower (tetraploid) 3	15.087
CRA001975	CRR073297	Stem 1	28.859
	CRR073298	Stem 2	29.515
	CRR073299	Stem 3	14.720
	CRR073300	Leaf 1	40.864
	CRR073301	Leaf 2	38.527
	CRR073302	Leaf 3	20.864
	CRR073303	Juvenile bud 1	23.324
	CRR073304	Juvenile bud 2	16.346
	CRR073305	Juvenile bud 3	17.127
	CRR073306	Third green 1	8.063
	CRR073307	Third green 2	9.871
	CRR073308	Third green 3	7.925
	CRR073309	Second white 1	6.935
	CRR073310	Second white 2	8.202
	CRR073311	Second white 3	4.769
	CRR073312	Silver flowering 1	4.257
	CRR073313	Silver flowering 2	4.105
	CRR073314	Silver flowering 3	3.398
	CRR073315	Gold flowering 1	4.113
	CRR073316	Gold flowering 2	2.721
	CRR073317	Gold flowering 3	1.926
	CRR073318	Tawny withering 1	27.745
	CRR073319	Tawny withering 2	23.452
	CRR073320	Tawny withering 3	28.705