Detail information of GWHGAAZE004874


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010244155.12.3422E-142PREDICTED: UBA and UBX domain-containing protein At4g15410 [Nelumbo nucifera]
Swissprottr|Q7Y175|UBAX1_ARATH1E-90UBA and UBX domain-containing protein At4g15410
trEMBLtr|A5BGG6|A5BGG6_VITVI1E-141Putative uncharacterized protein {ECO:0000313|EMBL:CAN74529.1}
TAIR10AT4G04210.13E-93plant UBX domain containing protein 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene123601702123603221-
GWHAAZE00000001mRNA123601702123603221-
GWHAAZE00000001exon123601702123602103-
GWHAAZE00000001exon123602364123602459-
GWHAAZE00000001exon123602931123603221-
GWHAAZE00000001CDS123602931123603221-
GWHAAZE00000001CDS123602364123602459-
GWHAAZE00000001CDS123601702123602103-
Transcript Sequence

Network for GWHGAAZE004874

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08059.14SEP701437.10E-25
PF00789.21UBX1872615.60E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14012SHP1, UBX1, NSFL1C Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf75.605
SRR3591706second leaf46.345
SRR3591707mature leaf45.954
SRR3591708Shoot apex66.222
SRR3591709Stem116.518
SRR3591710White floral bud100.802
SRR3591711White flower126.736
SRR3591712Green floral bud99.948
SRR3591713Yellow flower147.844
SRP173429 SRR8316895Juvenile bud stage 53.200
SRR8316896Juvenile bud stage 80.997
SRR8316897Juvenile bud stage 33.448
SRR8316894Third green stage 30.560
SRR8316900Third green stage 96.845
SRR8316901Third green stage 99.245
SRR8316898Complete white stage 51.934
SRR8316899Complete white stage 163.630
SRR8316903Complete white stage 68.905
SRR8316902Silver flowering stage57.333
SRR8316904Silver flowering stage57.964
SRR8316905Silver flowering stage32.500
SRR8316906Gold flowering stage 129.676
SRR8316907Gold flowering stage 140.297
SRR8316908Gold flowering stage 121.217
SRP132670SRR6706286Control104.598
SRR6706287Light intensity 50%105.473
SRR6706288Light intensity 20%108.232
CNP0000432CNS0095592Slightly white alabastrum(diploid) 172.110
CNS0095593Slightly white alabastrum(diploid) 288.757
CNS0095594Slightly white alabastrum(diploid) 378.540
CNS0095595Whole white alabastrum(diploid) 265.459
CNS0095596Whole white alabastrum(diploid) 368.828
CNS0095597Whole white alabastrum(diploid) 467.127
CNS0095598Silvery flower (diploied) 185.531
CNS0095599Silvery flower (diploied) 282.486
CNS0095600Silvery flower (diploied) 3131.231
CNS0095601Golden flower (diploid) 184.480
CNS0095602Golden flower (diploid) 2128.816
CNS0095603Golden flower (diploid) 3129.889
CNS0095604Slightly white alabastrum(tetraploid) 177.490
CNS0095605Slightly white alabastrum(tetraploid) 272.295
CNS0095606Slightly white alabastrum(tetraploid) 3105.734
CNS0095607Whole white alabastrum(tetraploid) 156.067
CNS0095608Whole white alabastrum(tetraploid) 255.972
CNS0095609Whole white alabastrum(tetraploid) 396.837
CNS0095610Silvery flower (tetraploid) 1158.660
CNS0095611Silvery flower (tetraploid) 2150.378
CNS0095612Silvery flower (tetraploid) 3139.070
CNS0095613Golden flower (tetraploid) 1149.160
CNS0095614Golden flower (tetraploid) 2155.250
CNS0095615Golden flower (tetraploid) 3200.610
CRA001975CRR073297Stem 191.913
CRR073298Stem 288.348
CRR073299Stem 3117.855
CRR073300Leaf 193.911
CRR073301Leaf 2103.543
CRR073302Leaf 3116.584
CRR073303Juvenile bud 1111.015
CRR073304Juvenile bud 2108.325
CRR073305Juvenile bud 3130.315
CRR073306Third green 169.917
CRR073307Third green 275.056
CRR073308Third green 378.514
CRR073309Second white 1118.547
CRR073310Second white 287.617
CRR073311Second white 378.051
CRR073312Silver flowering 1102.898
CRR073313Silver flowering 2124.489
CRR073314Silver flowering 392.829
CRR073315Gold flowering 169.060
CRR073316Gold flowering 278.895
CRR073317Gold flowering 387.054
CRR073318Tawny withering 1102.682
CRR073319Tawny withering 284.952
CRR073320Tawny withering 3107.894