Gene detail

Detail information of GWHGAAZE004871

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004232684.1	PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 [Solanum lycopersicum]
Swissprot	tr\|Q6R2J8\|SRF8_ARATH	Protein STRUBBELIG-RECEPTOR FAMILY 8 (Precursor)
trEMBL	tr\|K4B9X7\|K4B9X7_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g081070.2.1}
TAIR10	AT4G22130.1	STRUBBELIG-receptor family 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	123571288	123581369	+
GWHAAZE00000001	mRNA	123571288	123581369	+
GWHAAZE00000001	exon	123571288	123571554	+
GWHAAZE00000001	exon	123571820	123571952	+
GWHAAZE00000001	exon	123572102	123572173	+
GWHAAZE00000001	exon	123572300	123572365	+
GWHAAZE00000001	exon	123572454	123572525	+
GWHAAZE00000001	exon	123572637	123572708	+
GWHAAZE00000001	exon	123573812	123573883	+
GWHAAZE00000001	exon	123573965	123574030	+
GWHAAZE00000001	exon	123574116	123574181	+
GWHAAZE00000001	exon	123574309	123574622	+
GWHAAZE00000001	exon	123577525	123577781	+
GWHAAZE00000001	exon	123578224	123578495	+
GWHAAZE00000001	exon	123578581	123578716	+
GWHAAZE00000001	exon	123580304	123580446	+
GWHAAZE00000001	exon	123580573	123580729	+
GWHAAZE00000001	exon	123580974	123581369	+
GWHAAZE00000001	five_prime_UTR	123571288	123571433	+
GWHAAZE00000001	CDS	123571434	123571554	+
GWHAAZE00000001	CDS	123571820	123571952	+
GWHAAZE00000001	CDS	123572102	123572173	+
GWHAAZE00000001	CDS	123572300	123572365	+
GWHAAZE00000001	CDS	123572454	123572525	+
GWHAAZE00000001	CDS	123572637	123572708	+
GWHAAZE00000001	CDS	123573812	123573883	+
GWHAAZE00000001	CDS	123573965	123574030	+
GWHAAZE00000001	CDS	123574116	123574181	+
GWHAAZE00000001	CDS	123574309	123574622	+
GWHAAZE00000001	CDS	123577525	123577781	+
GWHAAZE00000001	CDS	123578224	123578495	+
GWHAAZE00000001	CDS	123578581	123578716	+
GWHAAZE00000001	CDS	123580304	123580446	+
GWHAAZE00000001	CDS	123580573	123580729	+
GWHAAZE00000001	CDS	123580974	123581126	+
GWHAAZE00000001	three_prime_UTR	123581127	123581369	+

Transcript Sequence
>GWHTAAZE004877 TTAATGTCGTTAACAGCAATGGGGACACCTATTACAGATGATCTCACCTGCTCTTCTTCTTCAACTCTTCAATGGCTCTCTTGCATGTGTTTTAGGTCAACACGCGGTTGCTAACTGTACTTGCTGTGTCGGTAGATATAGCGGAAATGGTGGAGAACAGGTTGAGCTCTTCTCTGAAATCTCGATTTTCAAATGTGTTCTTGCTGCTCGCGATTGCGGTGATCTTCGCTCTTTCTGGCGTTGAAGGGGCTACTGATCCGTCCGATGTTCAAGCGCTTCAGGTTTTGTACACTTCACTGAATAGCCCTTCCCAGCTAACTGGTTGGAAATCAACTGGTGGCGATCCATGTGGAGAATCATGGAGAGGGATTACTTGCCAGGGTTCTGCTGTTGTTTCAATTCAAACTCCAGGGTTGGGACTCAGTGGAACAATGGGATACATGCTTTCAAGCCTTACATCTTTGAGAACATTAGACATGAGTGGCAACAACATTCATGATACAATTTCATATCAGTTACCACCAAATCTTACGAGCCTGAATCTTGCTAACAACAACTTAAGCGGGAATCTTCCTTATTCATTCTCTACCATGGCTTCTCTTAGTTCTGTGAATTTTAGCCATAATTCACTCTCTCAAGCAATTGGAGAAGTATTCACAAATCTTACTGGCCTTGCAACCTTGGATATCTCCGTGAACAACTTCAGTGGAGATCTTCCTAATTCATTCAGTTCGTTGCTGAATCTTTCTACTCTTCAAATGCAGAACAATCAATTAACTGGTTCTCTTAATGTTCTGGCTGCTTTGCCTTTGACTGATCTAAATGTAGCAGACAACCATTTCACTGGATGGATACCAAGGGAACTTATTTCTATCCCTCGGTTTATATATAATGGAAATTCGTTTGATAATAGCCCTGCTCCTCCTCCACCCCCATACACCGCACCGCCTCCTGGTAGATCTCGTAACAATCGCACTCAATCTCCTCCAGGTTCGCGAACACCCCAGGGTTCTAATGATCCAAACAATAGAAATATAAAAAAGGGGTTGGCTACTGCAACTATTATAGGCATAATTTTAGGTTCTTTGCTGGTGGCTATATTTGCATTGCTTGTTCTTGTTTTTTGCCTTAGAAAGGGCAAGAAGAAGAAAAGCAATCGACGAAGTTCTACAGGAAGCCTTCCTGTTACCACAGATAAAGTGAATACGGAGCTGCAAGAGCAAAGAGTAAAACACACAGCTAGTGTAATAGACTTGCAGCCCCCACCTGCAGAGAACATAACATCTGAGAGGATACATGGGAGAAATGGATCTGCAAGGAGAGTGAAGTCCCCAATAACTGCTACTTCATACACAGTTGCAGCTCTCCAAACAGCGACAAACAGTTTCAGTCAAGAAAATCTTATTGGTGAAGGTTCGGTTGGTCGTGTTTATAGAGCGGAGTTCCCAAATGGAAAGATAATGGCCATTAAGAAGATTGATAATGCGGCATTATCCCTGCAAGAGGAAGATAATTTTCTTGAAGCTGTTTCAAATATGTCGCGCTTGAGGCACCCAAACATCATTTCGCTGGCAGGATATTGTGCAGAGCATGGGCAACGACTTTTGGTTCATGATTATGTTGGAAATGGAAGCTTGCAAGATATGCTTCACTTCGCCGATGATAGAAGCAATACATTGACATGGAATGCACGTGTTAGAGTAGCACTTGGCACTGCTCGAGCTTTAGAGTATTTGCATGAAGTGTGCCTACCTTCTGTTGTACATAGAAACTTCAAATCTGCAAATATTTTACTTGATGAAGAGCTTAATCCCCACCTGTCTGACTGTGGCTTAGCTTCTCTTACACCAAATACAGAAAGACAGGTATCATCGACTCAGATGGTCGGTTCATTTGGTTATAGTGCTCCGGAGTTTGCCTTATCTGGGATATACACTGTGAAAAGTGATGTGTATAGTTTTGGAGTGGTGATGTTGGAGCTTTTGACAGGTCGGAAGCCGCTTGATAGTTCAAGGGCACGATCAGAACAATCACTTGTAAGATGGGCCACTCCTCAACTCCATGATATAGATGCCTTGGCTAAAATGGTTGATCCTACGCTAAATGGCATGTATCCTGCCAAGTCTTTGTCACGTTTTGCTGATATCATTGCCCTCTGTGTTCAGCCAGAACCCGAGTTTCGGCCTCCAATGTCTGAAGTTGTACAAGCACTGGTTCGGCTAATGCAAAGGGCAAGTGTGGTCAAAAGGAGATCGAGTGATGAATCTGGGTTTGGATATAAGACTCCGGATATGGAGGCCTATGAGATGTCATATTAAGCTCTGAGGTATTGGCAACCTTTGCAATTTTGCAAACAAATTGTGCAGAGGCCAGCAGTCACTGAAGCGCGTTCAGAGGAAAGATGTTGGAGGTTGGTTGATCTATGTCGGATCGGAATGATGCCTATTTTTTTCTTTGCAATCTGCTAGTTAAAGCACAAGTTGAGGTATATATTTTACCGAAGATTTTTCTATATTGTATCTAGAAACTATCATTGAATATTTTGATATTTGTCCAAGATA

Network for GWHGAAZE004871

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	38	77	1.70E-09
PF13855.7	LRR_8	126	186	3.40E-07
PF00069.26	Pkinase	415	687	1.90E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.121
	SRR3591706	second leaf	18.814
	SRR3591707	mature leaf	10.634
	SRR3591708	Shoot apex	32.124
	SRR3591709	Stem	22.624
	SRR3591710	White floral bud	10.918
	SRR3591711	White flower	9.319
	SRR3591712	Green floral bud	21.332
	SRR3591713	Yellow flower	0.737
SRP173429	SRR8316895	Juvenile bud stage	18.547
	SRR8316896	Juvenile bud stage	20.986
	SRR8316897	Juvenile bud stage	8.555
	SRR8316894	Third green stage	12.494
	SRR8316900	Third green stage	29.113
	SRR8316901	Third green stage	25.055
	SRR8316898	Complete white stage	2.814
	SRR8316899	Complete white stage	32.482
	SRR8316903	Complete white stage	6.213
	SRR8316902	Silver flowering stage	0.727
	SRR8316904	Silver flowering stage	1.784
	SRR8316905	Silver flowering stage	0.459
	SRR8316906	Gold flowering stage	1.664
	SRR8316907	Gold flowering stage	1.036
	SRR8316908	Gold flowering stage	0.864
SRP132670	SRR6706286	Control	15.524
	SRR6706287	Light intensity 50%	19.325
	SRR6706288	Light intensity 20%	21.751
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.287
	CNS0095593	Slightly white alabastrum(diploid) 2	20.267
	CNS0095594	Slightly white alabastrum(diploid) 3	14.323
	CNS0095595	Whole white alabastrum(diploid) 2	16.434
	CNS0095596	Whole white alabastrum(diploid) 3	9.964
	CNS0095597	Whole white alabastrum(diploid) 4	10.440
	CNS0095598	Silvery flower (diploied) 1	21.360
	CNS0095599	Silvery flower (diploied) 2	17.556
	CNS0095600	Silvery flower (diploied) 3	6.861
	CNS0095601	Golden flower (diploid) 1	13.673
	CNS0095602	Golden flower (diploid) 2	6.161
	CNS0095603	Golden flower (diploid) 3	6.875
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.911
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.838
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.688
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.210
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.491
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.639
	CNS0095610	Silvery flower (tetraploid) 1	2.398
	CNS0095611	Silvery flower (tetraploid) 2	4.352
	CNS0095612	Silvery flower (tetraploid) 3	3.264
	CNS0095613	Golden flower (tetraploid) 1	0.158
	CNS0095614	Golden flower (tetraploid) 2	1.448
	CNS0095615	Golden flower (tetraploid) 3	0.104
CRA001975	CRR073297	Stem 1	27.821
	CRR073298	Stem 2	25.249
	CRR073299	Stem 3	19.531
	CRR073300	Leaf 1	27.463
	CRR073301	Leaf 2	24.423
	CRR073302	Leaf 3	25.166
	CRR073303	Juvenile bud 1	18.152
	CRR073304	Juvenile bud 2	13.850
	CRR073305	Juvenile bud 3	19.525
	CRR073306	Third green 1	2.895
	CRR073307	Third green 2	3.038
	CRR073308	Third green 3	3.601
	CRR073309	Second white 1	1.014
	CRR073310	Second white 2	0.581
	CRR073311	Second white 3	0.254
	CRR073312	Silver flowering 1	0.470
	CRR073313	Silver flowering 2	0.061
	CRR073314	Silver flowering 3	0.415
	CRR073315	Gold flowering 1	4.865
	CRR073316	Gold flowering 2	7.336
	CRR073317	Gold flowering 3	3.630
	CRR073318	Tawny withering 1	23.844
	CRR073319	Tawny withering 2	19.080
	CRR073320	Tawny withering 3	26.319