Detail information of GWHGAAZE004868


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003631587.10PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis vinifera]
Swissprottr|P93008|RH21_ARATH0DEAD-box ATP-dependent RNA helicase 21
trEMBLtr|F6I1B2|F6I1B2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB60728.1}
TAIR10AT2G33730.10P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene123526848123528803-
GWHAAZE00000001mRNA123526848123528803-
GWHAAZE00000001exon123528244123528803-
GWHAAZE00000001exon123528062123528186-
GWHAAZE00000001exon123526848123527986-
GWHAAZE00000001CDS123528244123528803-
GWHAAZE00000001CDS123528062123528186-
GWHAAZE00000001CDS123526848123527986-
Transcript Sequence

Network for GWHGAAZE004868

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.30DEAD2274132.40E-46
PF00271.32Helicase_C4455543.10E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12858DDX23, PRP28 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.218
SRR3591706second leaf0.000
SRR3591707mature leaf0.083
SRR3591708Shoot apex0.184
SRR3591709Stem0.485
SRR3591710White floral bud0.949
SRR3591711White flower2.305
SRR3591712Green floral bud1.092
SRR3591713Yellow flower2.923
SRP173429 SRR8316895Juvenile bud stage 0.820
SRR8316896Juvenile bud stage 0.820
SRR8316897Juvenile bud stage 0.276
SRR8316894Third green stage 0.094
SRR8316900Third green stage 0.785
SRR8316901Third green stage 0.794
SRR8316898Complete white stage 0.726
SRR8316899Complete white stage 2.500
SRR8316903Complete white stage 1.200
SRR8316902Silver flowering stage1.851
SRR8316904Silver flowering stage1.637
SRR8316905Silver flowering stage1.121
SRR8316906Gold flowering stage 4.655
SRR8316907Gold flowering stage 4.034
SRR8316908Gold flowering stage 3.241
SRP132670SRR6706286Control2.371
SRR6706287Light intensity 50%1.546
SRR6706288Light intensity 20%2.102
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.912
CNS0095593Slightly white alabastrum(diploid) 20.559
CNS0095594Slightly white alabastrum(diploid) 30.352
CNS0095595Whole white alabastrum(diploid) 21.148
CNS0095596Whole white alabastrum(diploid) 30.779
CNS0095597Whole white alabastrum(diploid) 40.935
CNS0095598Silvery flower (diploied) 12.160
CNS0095599Silvery flower (diploied) 21.260
CNS0095600Silvery flower (diploied) 33.767
CNS0095601Golden flower (diploid) 12.487
CNS0095602Golden flower (diploid) 27.021
CNS0095603Golden flower (diploid) 36.619
CNS0095604Slightly white alabastrum(tetraploid) 10.351
CNS0095605Slightly white alabastrum(tetraploid) 20.081
CNS0095606Slightly white alabastrum(tetraploid) 30.601
CNS0095607Whole white alabastrum(tetraploid) 10.636
CNS0095608Whole white alabastrum(tetraploid) 20.192
CNS0095609Whole white alabastrum(tetraploid) 31.079
CNS0095610Silvery flower (tetraploid) 15.343
CNS0095611Silvery flower (tetraploid) 24.095
CNS0095612Silvery flower (tetraploid) 315.196
CNS0095613Golden flower (tetraploid) 17.917
CNS0095614Golden flower (tetraploid) 25.785
CNS0095615Golden flower (tetraploid) 36.928
CRA001975CRR073297Stem 11.278
CRR073298Stem 21.063
CRR073299Stem 30.833
CRR073300Leaf 11.236
CRR073301Leaf 21.261
CRR073302Leaf 30.387
CRR073303Juvenile bud 11.140
CRR073304Juvenile bud 21.539
CRR073305Juvenile bud 31.518
CRR073306Third green 11.722
CRR073307Third green 20.949
CRR073308Third green 31.098
CRR073309Second white 11.422
CRR073310Second white 22.790
CRR073311Second white 32.772
CRR073312Silver flowering 16.176
CRR073313Silver flowering 28.334
CRR073314Silver flowering 37.734
CRR073315Gold flowering 10.349
CRR073316Gold flowering 20.504
CRR073317Gold flowering 30.241
CRR073318Tawny withering 10.761
CRR073319Tawny withering 21.235
CRR073320Tawny withering 30.391