Detail information of GWHGAAZE004862


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP04435.10unnamed protein product [Coffea canephora]
trEMBLtr|A0A068U7B5|A0A068U7B5_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313|EMBL:CDP04435.1}
TAIR10AT4G04350.11E-140tRNA synthetase class I (I, L, M and V) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene123439487123445483-
GWHAAZE00000001mRNA123439487123445483-
GWHAAZE00000001exon123439487123439569-
GWHAAZE00000001exon123439675123439753-
GWHAAZE00000001exon123439870123440000-
GWHAAZE00000001exon123440695123440789-
GWHAAZE00000001exon123440965123441086-
GWHAAZE00000001exon123441234123441335-
GWHAAZE00000001exon123441443123441552-
GWHAAZE00000001exon123442853123443015-
GWHAAZE00000001exon123443260123443418-
GWHAAZE00000001exon123443606123443724-
GWHAAZE00000001exon123443807123443868-
GWHAAZE00000001exon123444085123444179-
GWHAAZE00000001exon123444320123444403-
GWHAAZE00000001exon123444511123444708-
GWHAAZE00000001exon123445243123445347-
GWHAAZE00000001exon123445478123445483-
GWHAAZE00000001CDS123445478123445483-
GWHAAZE00000001CDS123445243123445347-
GWHAAZE00000001CDS123444511123444708-
GWHAAZE00000001CDS123444320123444403-
GWHAAZE00000001CDS123444085123444179-
GWHAAZE00000001CDS123443807123443868-
GWHAAZE00000001CDS123443606123443724-
GWHAAZE00000001CDS123443260123443418-
GWHAAZE00000001CDS123442853123443015-
GWHAAZE00000001CDS123441443123441552-
GWHAAZE00000001CDS123441234123441335-
GWHAAZE00000001CDS123440965123441086-
GWHAAZE00000001CDS123440695123440789-
GWHAAZE00000001CDS123439870123440000-
GWHAAZE00000001CDS123439675123439753-
GWHAAZE00000001CDS123439487123439569-
Transcript Sequence

Network for GWHGAAZE004862

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13603.7tRNA-synt_1_21251831.90E-19
PF08264.14Anticodon_14805281.40E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01869LARS, leuS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006429biological_processleucyl-tRNA aminoacylation
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0000166molecular_functionnucleotide binding
GO:0004823molecular_functionleucine-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0002161molecular_functionaminoacyl-tRNA editing activity
GO:0004812molecular_functionaminoacyl-tRNA ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.981
SRR3591706second leaf2.288
SRR3591707mature leaf1.834
SRR3591708Shoot apex1.722
SRR3591709Stem2.553
SRR3591710White floral bud0.813
SRR3591711White flower0.972
SRR3591712Green floral bud0.451
SRR3591713Yellow flower0.876
SRP173429 SRR8316895Juvenile bud stage 1.741
SRR8316896Juvenile bud stage 2.234
SRR8316897Juvenile bud stage 1.054
SRR8316894Third green stage 1.486
SRR8316900Third green stage 2.986
SRR8316901Third green stage 2.706
SRR8316898Complete white stage 2.982
SRR8316899Complete white stage 5.184
SRR8316903Complete white stage 5.146
SRR8316902Silver flowering stage2.327
SRR8316904Silver flowering stage2.291
SRR8316905Silver flowering stage1.259
SRR8316906Gold flowering stage 3.384
SRR8316907Gold flowering stage 4.378
SRR8316908Gold flowering stage 3.394
SRP132670SRR6706286Control2.390
SRR6706287Light intensity 50%2.602
SRR6706288Light intensity 20%3.007
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.411
CNS0095593Slightly white alabastrum(diploid) 22.141
CNS0095594Slightly white alabastrum(diploid) 31.754
CNS0095595Whole white alabastrum(diploid) 21.830
CNS0095596Whole white alabastrum(diploid) 31.403
CNS0095597Whole white alabastrum(diploid) 42.990
CNS0095598Silvery flower (diploied) 15.573
CNS0095599Silvery flower (diploied) 24.135
CNS0095600Silvery flower (diploied) 33.504
CNS0095601Golden flower (diploid) 14.473
CNS0095602Golden flower (diploid) 23.011
CNS0095603Golden flower (diploid) 32.586
CNS0095604Slightly white alabastrum(tetraploid) 13.839
CNS0095605Slightly white alabastrum(tetraploid) 22.141
CNS0095606Slightly white alabastrum(tetraploid) 34.280
CNS0095607Whole white alabastrum(tetraploid) 12.468
CNS0095608Whole white alabastrum(tetraploid) 21.330
CNS0095609Whole white alabastrum(tetraploid) 34.485
CNS0095610Silvery flower (tetraploid) 112.955
CNS0095611Silvery flower (tetraploid) 28.723
CNS0095612Silvery flower (tetraploid) 310.397
CNS0095613Golden flower (tetraploid) 14.950
CNS0095614Golden flower (tetraploid) 27.265
CNS0095615Golden flower (tetraploid) 33.067
CRA001975CRR073297Stem 11.624
CRR073298Stem 21.153
CRR073299Stem 30.068
CRR073300Leaf 12.781
CRR073301Leaf 22.009
CRR073302Leaf 30.407
CRR073303Juvenile bud 10.751
CRR073304Juvenile bud 20.315
CRR073305Juvenile bud 30.630
CRR073306Third green 10.166
CRR073307Third green 20.065
CRR073308Third green 30.205
CRR073309Second white 10.347
CRR073310Second white 20.330
CRR073311Second white 30.269
CRR073312Silver flowering 10.158
CRR073313Silver flowering 20.137
CRR073314Silver flowering 30.182
CRR073315Gold flowering 10.833
CRR073316Gold flowering 21.160
CRR073317Gold flowering 30.194
CRR073318Tawny withering 10.718
CRR073319Tawny withering 21.729
CRR073320Tawny withering 30.690