Gene detail

Detail information of GWHGAAZE004850

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011096042.1	3.63058E-51	PREDICTED: peroxisomal membrane protein PMP22-like [Sesamum indicum]
Swissprot	tr\|Q9ZS51\|PMP22_ARATH	1E-36	Peroxisomal membrane protein PMP22
trEMBL	tr\|A0A059CGF6\|A0A059CGF6_EUCGR	1E-50	Uncharacterized protein {ECO:0000313\|EMBL:KCW77000.1}
TAIR10	AT4G14305.1	8E-32	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	123268017	123269448	+
GWHAAZE00000001	mRNA	123268017	123269448	+
GWHAAZE00000001	exon	123268017	123268113	+
GWHAAZE00000001	exon	123268500	123268570	+
GWHAAZE00000001	exon	123268812	123268897	+
GWHAAZE00000001	exon	123269021	123269448	+
GWHAAZE00000001	CDS	123268017	123268113	+
GWHAAZE00000001	CDS	123268500	123268570	+
GWHAAZE00000001	CDS	123268812	123268897	+
GWHAAZE00000001	CDS	123269021	123269084	+
GWHAAZE00000001	three_prime_UTR	123269085	123269448	+

Transcript Sequence
>GWHTAAZE004856 ATGCCCGATAAATTATTTCAGGTGGTGGTGGAACAGTTGACAATTTCCCCTTGGAACAACTTGATGTTTATGCTCTATTATGGGTTGGTTGTCGAAGGCAGACCCTGGATCCAGGTGAAGTCTAAAATCAAAACGGAGTATCCGAAAGTGCAGTATGCTTCATGGACGTTCTGGCCAGTGGTGGGGTGGATAAATCACCAGCACGTGCCACTTCAGTTCCGCGTCATTGTCCAAAGCGTCGTTGCATGTTGCTGGGGCATATTCTTGAATCTACGAGCTGCAAGGTCTGTTGCATTGACTAAAGCTTTGAGCAAATGAAATGAATTGGTGAACACGAGCCCTCTGCTGTGGATCTGCAGCCATCAAATTACATTCGTACCGTTTGTAACTCGTAGATGGTGAAGAATGATTGTGTTATCTTCTTCTTTTAATTGTAGTAGTATACGTATAAATATGATGTTTACTTTTCTTAGAAGAAGCATGCAATGGGGATTGTAAACCGAGTTAACTGCAATTTATGTTGGTTGTACTTTTGGAAGTAGTCAATTTTCTGAGGTTTTAGTCATGTTATTCATTTGCATAAAGTTTCCCCGGGTAAATTTGATTCTTCCATTGCATTTTATTGTGTGGGTTTAAACCCAAAACACTTCTAAAATGTTGTTTATACCGTTACCAAAACCAA

Network for GWHGAAZE004850

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04117.13	Mpv17_PMP22	30	90	2.60E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13347	PXMP2, PMP22	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.677
	SRR3591706	second leaf	24.231
	SRR3591707	mature leaf	21.422
	SRR3591708	Shoot apex	53.402
	SRR3591709	Stem	53.766
	SRR3591710	White floral bud	59.486
	SRR3591711	White flower	48.231
	SRR3591712	Green floral bud	56.687
	SRR3591713	Yellow flower	32.938
SRP173429	SRR8316895	Juvenile bud stage	51.327
	SRR8316896	Juvenile bud stage	65.812
	SRR8316897	Juvenile bud stage	30.710
	SRR8316894	Third green stage	24.377
	SRR8316900	Third green stage	66.011
	SRR8316901	Third green stage	62.781
	SRR8316898	Complete white stage	37.527
	SRR8316899	Complete white stage	85.442
	SRR8316903	Complete white stage	53.246
	SRR8316902	Silver flowering stage	48.311
	SRR8316904	Silver flowering stage	55.869
	SRR8316905	Silver flowering stage	30.982
	SRR8316906	Gold flowering stage	78.323
	SRR8316907	Gold flowering stage	92.159
	SRR8316908	Gold flowering stage	62.268
SRP132670	SRR6706286	Control	52.053
	SRR6706287	Light intensity 50%	54.129
	SRR6706288	Light intensity 20%	60.972
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	94.637
	CNS0095593	Slightly white alabastrum(diploid) 2	98.259
	CNS0095594	Slightly white alabastrum(diploid) 3	90.281
	CNS0095595	Whole white alabastrum(diploid) 2	79.415
	CNS0095596	Whole white alabastrum(diploid) 3	61.861
	CNS0095597	Whole white alabastrum(diploid) 4	63.496
	CNS0095598	Silvery flower (diploied) 1	85.706
	CNS0095599	Silvery flower (diploied) 2	76.460
	CNS0095600	Silvery flower (diploied) 3	79.265
	CNS0095601	Golden flower (diploid) 1	71.110
	CNS0095602	Golden flower (diploid) 2	61.827
	CNS0095603	Golden flower (diploid) 3	64.731
	CNS0095604	Slightly white alabastrum(tetraploid) 1	80.414
	CNS0095605	Slightly white alabastrum(tetraploid) 2	82.133
	CNS0095606	Slightly white alabastrum(tetraploid) 3	98.878
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.426
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.258
	CNS0095609	Whole white alabastrum(tetraploid) 3	61.361
	CNS0095610	Silvery flower (tetraploid) 1	74.771
	CNS0095611	Silvery flower (tetraploid) 2	60.802
	CNS0095612	Silvery flower (tetraploid) 3	65.922
	CNS0095613	Golden flower (tetraploid) 1	64.372
	CNS0095614	Golden flower (tetraploid) 2	61.447
	CNS0095615	Golden flower (tetraploid) 3	42.758
CRA001975	CRR073297	Stem 1	46.820
	CRR073298	Stem 2	46.571
	CRR073299	Stem 3	55.802
	CRR073300	Leaf 1	42.870
	CRR073301	Leaf 2	53.786
	CRR073302	Leaf 3	58.003
	CRR073303	Juvenile bud 1	45.525
	CRR073304	Juvenile bud 2	34.267
	CRR073305	Juvenile bud 3	38.323
	CRR073306	Third green 1	36.305
	CRR073307	Third green 2	36.699
	CRR073308	Third green 3	32.661
	CRR073309	Second white 1	36.019
	CRR073310	Second white 2	39.949
	CRR073311	Second white 3	28.718
	CRR073312	Silver flowering 1	28.415
	CRR073313	Silver flowering 2	32.799
	CRR073314	Silver flowering 3	18.375
	CRR073315	Gold flowering 1	32.599
	CRR073316	Gold flowering 2	26.625
	CRR073317	Gold flowering 3	33.220
	CRR073318	Tawny withering 1	43.095
	CRR073319	Tawny withering 2	48.576
	CRR073320	Tawny withering 3	40.729