Gene detail

Detail information of GWHGAAZE004839

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009758707.1	3.6514E-131	PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic [Nicotiana sylvestris]
Swissprot	tr\|Q9SA96\|AROD1_ARATH	5E-118	Arogenate dehydratase/prephenate dehydratase 1, chloroplastic (Precursor)
trEMBL	tr\|M5X0D4\|M5X0D4_PRUPE	2E-127	Uncharacterized protein {ECO:0000313\|EMBL:EMJ15018.1}
TAIR10	AT1G11790.1	5E-96	arogenate dehydratase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	123182037	123185422	+
GWHAAZE00000001	mRNA	123182037	123185422	+
GWHAAZE00000001	exon	123182037	123182102	+
GWHAAZE00000001	exon	123182309	123182401	+
GWHAAZE00000001	exon	123182492	123182692	+
GWHAAZE00000001	exon	123182881	123182961	+
GWHAAZE00000001	exon	123183032	123183138	+
GWHAAZE00000001	exon	123185013	123185082	+
GWHAAZE00000001	exon	123185161	123185250	+
GWHAAZE00000001	exon	123185351	123185422	+
GWHAAZE00000001	CDS	123182037	123182102	+
GWHAAZE00000001	CDS	123182309	123182401	+
GWHAAZE00000001	CDS	123182492	123182692	+
GWHAAZE00000001	CDS	123182881	123182961	+
GWHAAZE00000001	CDS	123183032	123183138	+
GWHAAZE00000001	CDS	123185013	123185082	+
GWHAAZE00000001	CDS	123185161	123185250	+
GWHAAZE00000001	CDS	123185351	123185422	+

Transcript Sequence
>GWHTAAZE004845 CCCTTGTCTACATCAGAAAGCTTTTGTTCTCTTAGTGATGGTTCAAAGGTGCGGGTTGCTTATCAGGGGGTGCCAGGTGCATATAGTGAGGATGCTGCACTTAAAACATACCCAATGTGTTATACTGTCTCATGTGAACAGACTGAAGCTGCATTAAAGGCAGTTGAGCTATCATTAGTGGACAAAGCAGTACTCCCTATTGAGAGTTCTGTAGGTGGAAGCATCCACCGTAATTATGACTTACTCCTGCGTCAAAGGTTGCATATAGTAGCGGAAGTGCATTTGGTAGTTGACCACTGCCTTTTGGGGTTGCCTGGGGCCAGGAAAGAGAAGTTAAATCGTGTTCTGAGTGACCATCATGTACTTGATCAATGTGAAATAATGTTAAACAATTTGGGCGTTGTCAAAGTTAAAGCCCATGATACTGCCGGTGCTGCTCAGATTGTAGCTTCTAATGGTCTGAGAGATACTGGAGCAGTTGCAAGTGGTCGAGCTGCAGAAATATATGGGCTTGACATTCTTGCCGAAAGAATCCAGGCAAGGCTTTTACATGTTATTACCCGTTTTCTGATACTTGCAAGGGAACCAATAATCCCAGGAAGCCAGAGGCCCCATAAGACGAGCATTGTCTTCACTCTAGAAGAAGGTACCGGGGTACTATTCAAAGCCTTAGCTGTGTTTGCTCTGAGGGGCATCAATTTGTTAAAGCTTGAGGCTCGTCCACAGAGAAAGCACCCGTTGCGGATTGTTGATGAGAATAGGAAGGGAACTGCCAAGTAA

Network for GWHGAAZE004839

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00800.19	PDT	19	196	2.40E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05359	ADT, PDT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0009094	biological_process	L-phenylalanine biosynthetic process
GO:0004664	molecular_function	prephenate dehydratase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.276
	SRR3591706	second leaf	4.619
	SRR3591707	mature leaf	2.294
	SRR3591708	Shoot apex	6.445
	SRR3591709	Stem	4.347
	SRR3591710	White floral bud	3.011
	SRR3591711	White flower	5.222
	SRR3591712	Green floral bud	10.756
	SRR3591713	Yellow flower	4.646
SRP173429	SRR8316895	Juvenile bud stage	10.096
	SRR8316896	Juvenile bud stage	18.909
	SRR8316897	Juvenile bud stage	10.874
	SRR8316894	Third green stage	6.797
	SRR8316900	Third green stage	21.263
	SRR8316901	Third green stage	19.389
	SRR8316898	Complete white stage	2.401
	SRR8316899	Complete white stage	18.114
	SRR8316903	Complete white stage	3.981
	SRR8316902	Silver flowering stage	1.569
	SRR8316904	Silver flowering stage	2.315
	SRR8316905	Silver flowering stage	0.718
	SRR8316906	Gold flowering stage	4.545
	SRR8316907	Gold flowering stage	5.301
	SRR8316908	Gold flowering stage	4.036
SRP132670	SRR6706286	Control	15.851
	SRR6706287	Light intensity 50%	17.201
	SRR6706288	Light intensity 20%	21.594
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.337
	CNS0095593	Slightly white alabastrum(diploid) 2	13.763
	CNS0095594	Slightly white alabastrum(diploid) 3	19.989
	CNS0095595	Whole white alabastrum(diploid) 2	11.509
	CNS0095596	Whole white alabastrum(diploid) 3	13.581
	CNS0095597	Whole white alabastrum(diploid) 4	9.529
	CNS0095598	Silvery flower (diploied) 1	7.647
	CNS0095599	Silvery flower (diploied) 2	7.209
	CNS0095600	Silvery flower (diploied) 3	3.857
	CNS0095601	Golden flower (diploid) 1	6.444
	CNS0095602	Golden flower (diploid) 2	3.874
	CNS0095603	Golden flower (diploid) 3	4.582
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.928
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.048
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.494
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.462
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.009
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.071
	CNS0095610	Silvery flower (tetraploid) 1	6.693
	CNS0095611	Silvery flower (tetraploid) 2	8.671
	CNS0095612	Silvery flower (tetraploid) 3	5.003
	CNS0095613	Golden flower (tetraploid) 1	4.320
	CNS0095614	Golden flower (tetraploid) 2	5.979
	CNS0095615	Golden flower (tetraploid) 3	1.633
CRA001975	CRR073297	Stem 1	15.134
	CRR073298	Stem 2	11.466
	CRR073299	Stem 3	10.262
	CRR073300	Leaf 1	17.793
	CRR073301	Leaf 2	16.028
	CRR073302	Leaf 3	19.649
	CRR073303	Juvenile bud 1	15.041
	CRR073304	Juvenile bud 2	11.608
	CRR073305	Juvenile bud 3	11.340
	CRR073306	Third green 1	0.510
	CRR073307	Third green 2	0.963
	CRR073308	Third green 3	1.103
	CRR073309	Second white 1	2.231
	CRR073310	Second white 2	1.746
	CRR073311	Second white 3	0.483
	CRR073312	Silver flowering 1	0.417
	CRR073313	Silver flowering 2	1.877
	CRR073314	Silver flowering 3	0.586
	CRR073315	Gold flowering 1	5.147
	CRR073316	Gold flowering 2	10.699
	CRR073317	Gold flowering 3	3.484
	CRR073318	Tawny withering 1	8.438
	CRR073319	Tawny withering 2	6.710
	CRR073320	Tawny withering 3	3.375