Gene detail

Detail information of GWHGAAZE004829

Functional Annotation

Database	Orthologs	Annotation
Nr	ACY78680.1	calcium-dependent protein kinase 1 [Panax ginseng]
Swissprot	tr\|P28582\|CDPK_DAUCA	Calcium-dependent protein kinase
trEMBL	tr\|D1MEN6\|D1MEN6_PANGI	Calcium-dependent protein kinase 1 {ECO:0000313\|EMBL:ACY78680.1}
TAIR10	AT4G04720.1	calcium-dependent protein kinase 21

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	123025946	123031178	+
GWHAAZE00000001	mRNA	123025946	123031178	+
GWHAAZE00000001	exon	123025946	123026702	+
GWHAAZE00000001	exon	123028492	123028635	+
GWHAAZE00000001	exon	123028735	123028887	+
GWHAAZE00000001	exon	123029326	123029441	+
GWHAAZE00000001	exon	123030100	123030267	+
GWHAAZE00000001	exon	123030411	123030538	+
GWHAAZE00000001	exon	123030921	123031020	+
GWHAAZE00000001	exon	123031104	123031178	+
GWHAAZE00000001	CDS	123025946	123026702	+
GWHAAZE00000001	CDS	123028492	123028635	+
GWHAAZE00000001	CDS	123028735	123028887	+
GWHAAZE00000001	CDS	123029326	123029441	+
GWHAAZE00000001	CDS	123030100	123030267	+
GWHAAZE00000001	CDS	123030411	123030538	+
GWHAAZE00000001	CDS	123030921	123031020	+
GWHAAZE00000001	CDS	123031104	123031178	+

Transcript Sequence
>GWHTAAZE004835 ATGGGTGGTTGTCTCAGCAAGAAAAGGCATCGTCATCAACAAGATCCAAAAGGTTACCAGCCTGTTCCTCATCAAACCCATTTTGAAAAAGAGAAACCCTCGGCAACCCATTTCCCGGTGGAGCAGCCCCGATTAGAATTACCCCACCACCACCCACCGCCACCACAGCCACAGGTACACCCAAAAGTCCCAGCTACATCGCCGCCGGCACCCCAAAAGACCGGCTCCGGTGGTCAAAGGGTTGATCCCAAAAACATATTGGATAGGCCATTTGAGGACATTAGGGAACACTATTCCCTTGGGAAAGAACTGGGTAGGGGCCAATTTGGAGTGACATATAATTGCATGGAAAATGAGACTGGCCTGGCTTATGCTTGCAAGTCAATACTGAAAAGAAAGCTTGTTAACAAGAATGATAAAGAGGATATCAAGAGAGAGGTTCATATTATGCAGCATTTGAGTGGGCAGCCTAATATTGTGGAATTCAAGGGTTGCTATGAGGATAGGCATTCTGTGCATTTAGTGATGGAGCTTTGTGCCGGTGGGGAACTATTTGATCGAATTATCGCTGAGGGACATTATTCAGAGCGAGCTGCTGCTAGAATTTGTAGGCAAATTGTGAATGTTGTTCATATGTGTCACTTTATGGGGGTGATGCATAGGGATCTTAAGCCTGAGAATTTCTTGCTTTCTACCAAGTCTGAAGGATCAAGGATTAAGGCTACTGATTTCGGACTCTCTGTCTTTATAGAAGAAGGGAAGGTGTACCGTGATATAGTAGGCAGTGCTTACTATGTTGCCCCAGAAGTATTAAGGCGTAGTTATGGAAAGGAAATAGATATTTGGAGTGCTGGAGTTATTTTGTATATTCTACTCAGTGGTGTGCCTCCGTTTTGGGCTGAAAATGAGAAGGGAATATTTGATGCCATACTACAAGGAGAAATTGACTTTGAAAGCCAGCCATGGCCGTCAATATCAAGAAGCGCGAAAGACCTTGTCCGAAAGATGCTGACACCGGACCCAAGAAAGAGGATTACTTCATCTCAAGTTCTTGATCACCCATGGCTTAGAGAAGGCGGAGAAGCATCAGACAAGCCAATAGATAGTGCAGTGCTCTCTAGACTGAAGCAATTCAGGGCAATGAACAAGCTCAAGAAACTGGCTTTGAAGGTCATTGCGGAAAGCTTATCAGAAGAAGAAATAAAAGGTCTTAAAGCAATGTTCAAAAACATAGACACAGACAAGAGTGGCACAATTACCTATGAAGAATTGAAATCAGGATTGGCTCGGCTCGGCTCCAAGCTGTCCGAAGCTGAAGTCCAGCAACTAATGGAAGCTGCTGATGTTGATGGAAATGGAACAATTGACTACATTGAATTTATCACTGCTACTATGCATAGGCACAAACTCGAAACAGATGAGCATCTACTAAAAGCATTTCGTTTTTTTGACAAGGATGACAGCGGCTTTATAACTATGGATGAACTGGAAAGTGCCATGAAAGAGTATGGAATGGGCGACGAAGCTACCATCAAGGAAATAATTTCTGAAGTGGACACTGATAATGACGGGAAAATCAACTTCGAGGAGTTCTGCACAATGATGAGAAGCGGTCCATCACAGCCAGCAAAACTCTTTTAA

Network for GWHGAAZE004829

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	98	356	8.30E-74
PF13499.7	EF-hand_7	404	464	1.10E-12
PF13499.7	EF-hand_7	474	536	3.00E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.078
	SRR3591706	second leaf	19.801
	SRR3591707	mature leaf	18.541
	SRR3591708	Shoot apex	18.169
	SRR3591709	Stem	25.825
	SRR3591710	White floral bud	66.508
	SRR3591711	White flower	51.750
	SRR3591712	Green floral bud	52.273
	SRR3591713	Yellow flower	50.789
SRP173429	SRR8316895	Juvenile bud stage	24.302
	SRR8316896	Juvenile bud stage	35.120
	SRR8316897	Juvenile bud stage	14.626
	SRR8316894	Third green stage	16.175
	SRR8316900	Third green stage	50.064
	SRR8316901	Third green stage	47.072
	SRR8316898	Complete white stage	22.522
	SRR8316899	Complete white stage	56.510
	SRR8316903	Complete white stage	30.955
	SRR8316902	Silver flowering stage	21.223
	SRR8316904	Silver flowering stage	29.339
	SRR8316905	Silver flowering stage	16.074
	SRR8316906	Gold flowering stage	51.635
	SRR8316907	Gold flowering stage	46.147
	SRR8316908	Gold flowering stage	50.620
SRP132670	SRR6706286	Control	50.137
	SRR6706287	Light intensity 50%	46.342
	SRR6706288	Light intensity 20%	44.683
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.715
	CNS0095593	Slightly white alabastrum(diploid) 2	37.290
	CNS0095594	Slightly white alabastrum(diploid) 3	37.315
	CNS0095595	Whole white alabastrum(diploid) 2	58.198
	CNS0095596	Whole white alabastrum(diploid) 3	56.744
	CNS0095597	Whole white alabastrum(diploid) 4	70.387
	CNS0095598	Silvery flower (diploied) 1	32.398
	CNS0095599	Silvery flower (diploied) 2	28.357
	CNS0095600	Silvery flower (diploied) 3	39.834
	CNS0095601	Golden flower (diploid) 1	34.131
	CNS0095602	Golden flower (diploid) 2	41.697
	CNS0095603	Golden flower (diploid) 3	42.278
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.262
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.511
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.819
	CNS0095607	Whole white alabastrum(tetraploid) 1	59.973
	CNS0095608	Whole white alabastrum(tetraploid) 2	75.472
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.479
	CNS0095610	Silvery flower (tetraploid) 1	34.656
	CNS0095611	Silvery flower (tetraploid) 2	33.718
	CNS0095612	Silvery flower (tetraploid) 3	36.996
	CNS0095613	Golden flower (tetraploid) 1	27.934
	CNS0095614	Golden flower (tetraploid) 2	39.272
	CNS0095615	Golden flower (tetraploid) 3	44.582
CRA001975	CRR073297	Stem 1	32.315
	CRR073298	Stem 2	30.973
	CRR073299	Stem 3	25.144
	CRR073300	Leaf 1	42.462
	CRR073301	Leaf 2	41.495
	CRR073302	Leaf 3	34.335
	CRR073303	Juvenile bud 1	46.368
	CRR073304	Juvenile bud 2	37.120
	CRR073305	Juvenile bud 3	37.530
	CRR073306	Third green 1	35.295
	CRR073307	Third green 2	31.537
	CRR073308	Third green 3	34.928
	CRR073309	Second white 1	17.465
	CRR073310	Second white 2	25.678
	CRR073311	Second white 3	24.591
	CRR073312	Silver flowering 1	24.698
	CRR073313	Silver flowering 2	23.752
	CRR073314	Silver flowering 3	21.083
	CRR073315	Gold flowering 1	21.610
	CRR073316	Gold flowering 2	21.685
	CRR073317	Gold flowering 3	9.931
	CRR073318	Tawny withering 1	39.401
	CRR073319	Tawny withering 2	37.697
	CRR073320	Tawny withering 3	31.339