Gene detail

Detail information of GWHGAAZE004819

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI23193.3	2.7481E-104	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q93YW7\|CLS_ARATH	8E-93	Cardiolipin synthase, mitochondrial (Precursor)
trEMBL	tr\|E0CVN2\|E0CVN2_VITVI	1E-104	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23193.3}
TAIR10	AT4G04870.1	5E-70	cardiolipin synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	122845968	122848452	+
GWHAAZE00000001	mRNA	122845968	122848452	+
GWHAAZE00000001	exon	122845968	122846212	+
GWHAAZE00000001	exon	122846768	122846834	+
GWHAAZE00000001	exon	122846933	122847007	+
GWHAAZE00000001	exon	122847112	122847163	+
GWHAAZE00000001	exon	122847343	122847428	+
GWHAAZE00000001	exon	122847502	122847576	+
GWHAAZE00000001	exon	122848057	122848151	+
GWHAAZE00000001	exon	122848243	122848452	+
GWHAAZE00000001	five_prime_UTR	122845968	122846212	+
GWHAAZE00000001	five_prime_UTR	122846768	122846768	+
GWHAAZE00000001	CDS	122846769	122846834	+
GWHAAZE00000001	CDS	122846933	122847007	+
GWHAAZE00000001	CDS	122847112	122847163	+
GWHAAZE00000001	CDS	122847343	122847428	+
GWHAAZE00000001	CDS	122847502	122847576	+
GWHAAZE00000001	CDS	122848057	122848151	+
GWHAAZE00000001	CDS	122848243	122848330	+
GWHAAZE00000001	three_prime_UTR	122848331	122848452	+

Transcript Sequence
>GWHTAAZE004825 TCCGCCTACTCTCTAGGCTTTGAACATACAATCCCACGTTCCAACCCTCCCAAAACCCCAAACATAATCCCCAAATTAGCTTAACTTGACAAATCGACATACGGTGGGAACTCTAATACCAAGGAGGAATTCATCGTCACACGCCTTGCTCTCGATATTCATCGTCCAAGCTTGGTCGATAGTTTTCTGAATTTTCCCAATTTAATCTCCTTCACCCGATTGCTTTCTGGTCCATTCCTTGGATGGATGATCGTGCAGGAAATGTATCTTCCGGCATTCGCTGGCCTGGCCATCTCTGGAGCAACAGACTGGCTAGATGGATATGTGGCAAGGAGGATGGGAATTAATTCTGTGGTTGGTTCCTACCTCGACCCTCTTGCTGATAAGGTTCTAATTGGATGTGTTGCACTGGCAATGGTAGAGAAGAATCTTCTGCACCCTGGACTTGTTGGACTCATTGTTCTGCGAGATGTAGCTCTTGTTGGTGGTGCAGTTTATAAAAGAGCTAGCAGCTTGGATTGGGAGTGGAGAAGTTGGTTTGACTTCTTCAACCTTGATGGGACCCATCCCCAGAAAGTTGAGCCTCTCTTGCTTAGCAAGGTTAATACGGTTCTGCAATTGATCCTGGTGACTGTAGCTCTTCTTCAACCTGAGTTTGGTACTCTGGAAACTCAATCATACATCACGTACTTGAGTTGGCTAGTGGCTTCAACAACAGCGGCTTCTACTGCAGCATATGGTGTACAACACCTGAGGAGCAAATCCCTGTCAATTAAAGTCTGAAACTTCCACTGATTGGTATGCATTTGAGTAGGAAGTGGTTTCAAGATCTTAGAAAAAGGATGATGCAAGGAATTTTACACTAGTTCTACATCGCAAGGAGAAATTAAGATACTATGCTCTGA

Network for GWHGAAZE004819

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01066.22	CDP-OH_P_transf	10	46	6.60E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08744	CRLS	Metabolic pathways	map01100
K08744	CRLS	Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0008654	biological_process	phospholipid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016021	cellular_component	integral component of membrane
GO:0016780	molecular_function	phosphotransferase activity, for other substituted phosphate groups
GO:0008444	molecular_function	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.044
	SRR3591706	second leaf	18.227
	SRR3591707	mature leaf	20.742
	SRR3591708	Shoot apex	30.288
	SRR3591709	Stem	34.590
	SRR3591710	White floral bud	24.183
	SRR3591711	White flower	26.382
	SRR3591712	Green floral bud	26.422
	SRR3591713	Yellow flower	21.086
SRP173429	SRR8316895	Juvenile bud stage	15.205
	SRR8316896	Juvenile bud stage	20.550
	SRR8316897	Juvenile bud stage	8.122
	SRR8316894	Third green stage	10.266
	SRR8316900	Third green stage	24.185
	SRR8316901	Third green stage	24.358
	SRR8316898	Complete white stage	8.103
	SRR8316899	Complete white stage	27.629
	SRR8316903	Complete white stage	16.197
	SRR8316902	Silver flowering stage	8.568
	SRR8316904	Silver flowering stage	12.688
	SRR8316905	Silver flowering stage	6.203
	SRR8316906	Gold flowering stage	19.658
	SRR8316907	Gold flowering stage	20.260
	SRR8316908	Gold flowering stage	16.486
SRP132670	SRR6706286	Control	15.939
	SRR6706287	Light intensity 50%	17.134
	SRR6706288	Light intensity 20%	18.897
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.475
	CNS0095593	Slightly white alabastrum(diploid) 2	17.370
	CNS0095594	Slightly white alabastrum(diploid) 3	13.247
	CNS0095595	Whole white alabastrum(diploid) 2	13.377
	CNS0095596	Whole white alabastrum(diploid) 3	13.962
	CNS0095597	Whole white alabastrum(diploid) 4	13.029
	CNS0095598	Silvery flower (diploied) 1	14.914
	CNS0095599	Silvery flower (diploied) 2	15.105
	CNS0095600	Silvery flower (diploied) 3	24.002
	CNS0095601	Golden flower (diploid) 1	20.659
	CNS0095602	Golden flower (diploid) 2	17.564
	CNS0095603	Golden flower (diploid) 3	18.543
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.277
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.318
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.492
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.787
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.647
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.280
	CNS0095610	Silvery flower (tetraploid) 1	23.525
	CNS0095611	Silvery flower (tetraploid) 2	25.260
	CNS0095612	Silvery flower (tetraploid) 3	16.219
	CNS0095613	Golden flower (tetraploid) 1	15.741
	CNS0095614	Golden flower (tetraploid) 2	18.973
	CNS0095615	Golden flower (tetraploid) 3	17.435
CRA001975	CRR073297	Stem 1	31.223
	CRR073298	Stem 2	29.761
	CRR073299	Stem 3	26.342
	CRR073300	Leaf 1	31.937
	CRR073301	Leaf 2	27.635
	CRR073302	Leaf 3	26.884
	CRR073303	Juvenile bud 1	28.572
	CRR073304	Juvenile bud 2	24.194
	CRR073305	Juvenile bud 3	29.403
	CRR073306	Third green 1	15.901
	CRR073307	Third green 2	15.084
	CRR073308	Third green 3	16.973
	CRR073309	Second white 1	8.494
	CRR073310	Second white 2	12.841
	CRR073311	Second white 3	10.801
	CRR073312	Silver flowering 1	9.988
	CRR073313	Silver flowering 2	8.292
	CRR073314	Silver flowering 3	8.833
	CRR073315	Gold flowering 1	14.371
	CRR073316	Gold flowering 2	21.072
	CRR073317	Gold flowering 3	14.640
	CRR073318	Tawny withering 1	30.086
	CRR073319	Tawny withering 2	23.506
	CRR073320	Tawny withering 3	28.336