Gene detail

Detail information of GWHGAAZE004813

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265911.1	0	PREDICTED: cytochrome P450 77A1 [Vitis vinifera]
Swissprot	tr\|O48928\|C77A3_SOYBN	4E-145	Cytochrome P450 77A3
trEMBL	tr\|E0CVM7\|E0CVM7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23188.3}
TAIR10	AT1G11600.1	7E-173	cytochrome P450, family 77, subfamily B, polypeptide 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	122773991	122775355	+
GWHAAZE00000001	mRNA	122773991	122775355	+
GWHAAZE00000001	exon	122773991	122774609	+
GWHAAZE00000001	exon	122774646	122775355	+
GWHAAZE00000001	CDS	122773991	122774609	+
GWHAAZE00000001	CDS	122774646	122775355	+

Transcript Sequence
>GWHTAAZE004819 ATGTACGTGGTACGCGATTTACGTGAAAAATACGGCCCAATATTCACCATGCAAATGGGCCAACGAACGCTTGTGATAGTCACAAGCGCGGACCTCATTCACGAAGCCCTAGTTCAAAGAGGTCCAACCTTCGCCAGCCGCCCGCCCGACTCTCCGATCCGCCTCATGTTTAGCGTTGGGAAATGTGCCATCAACTCTGCCGAATACGGCCCACTTTGGCGCACCCTGCGCAGGAACTTTGTCACCGAGTTGATAAACCCTACCCGGATCCGGCAGTGCAGCTGGATCCGCAAATGGGCCATTGAGACCCACATGAAAAATCTCCAAGAGGAGGCTTCTCAAAAAGGCTTTGTGGAGGTTATGAGTAACCTTAGGCTCACTGTTTGCAAAATTTTGATTTGTTTGTGTTTTGGTGCAAAAATATCGGAAGATCGAATTAAAAACATAGAAAGCATACTAAAAGATGTTATGATGGTTACACTGCCGAAGCTGCCGGACTTTTTGCCAGTTCTCTTGCCGTTGTTTCGGCGGCAAGTGAAGGAAGCTAAGGAGCTGAGGAGGAGACAAATAGAGAGTTTGGTTCCTTTGGTGAGAAACCGAAAAGCATTTGTGGAGAGTGGTGCAGCCTATATAGATTCCTTGTTCGGGCTTGAGCCAGTGGGTCGAGGGAGGCTAGGCGAAGAAGAGCTAATTACATTATGCTCCGAAGTTATTAATGCTGGTACAGATACGAGTGCGACCACGGTCGAATGGGCTTTACTTCACTTGGTCATTAACCAAGAGATACAAGAAAAATTGTACAATGAAATAGTTGATTGTGTGGGCAAAAATGGAATTATAAGTGAAAGTGACGTGGAAAAAATGCCCTACCTGGGCGCGGTGGTCAAGGAAACTTTCCGGAGACATCCACCTAGCCACTTCGTGTTGTCACATGCGGCGACTAAAGAGACCGAGCTAGGTGGGTACACGATTCCAGCCAATGTGAACGTTGAATTTTACACTGCATGGGTTACAGAGGATCCGAGTCTGTGGAAGGATCCGGCCGAGTTCCAGCCGGAGCGGTTTTTGGACGGGGACGGGGTAGATGTGGACGTAACGGGGACCCGTGGGGTGAAAATGATGCCATTTGGAGCTGGGCGGAGGATTTGCCCGGCGGCTACATTGGGTACGTTGCATATTAACTTGTTGCTAGCTAAGATGGTGCATGAATTCAAGTGGGTTCCAGTCCCGGGTGCCCCTCCGGACCCGACGGAGACCTTTGCATTCACGGTTGTGATGAAGAATCCCCTCAAAGCAGTTATTTTACCTAGGAAAAAAATTCAAGATTAG

Network for GWHGAAZE004813

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	3	429	8.70E-89

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K21995	CYP77A	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.233
	SRR3591706	second leaf	1.466
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	67.686
	SRR3591709	Stem	0.298
	SRR3591710	White floral bud	5.446
	SRR3591711	White flower	5.417
	SRR3591712	Green floral bud	2.620
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	5.725
	SRR8316896	Juvenile bud stage	2.085
	SRR8316897	Juvenile bud stage	0.921
	SRR8316894	Third green stage	0.779
	SRR8316900	Third green stage	0.033
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	3.426
	SRR8316903	Complete white stage	0.583
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.004
	SRR8316908	Gold flowering stage	0.109
SRP132670	SRR6706286	Control	0.240
	SRR6706287	Light intensity 50%	0.465
	SRR6706288	Light intensity 20%	0.461
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.211
	CNS0095593	Slightly white alabastrum(diploid) 2	4.725
	CNS0095594	Slightly white alabastrum(diploid) 3	4.262
	CNS0095595	Whole white alabastrum(diploid) 2	7.182
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	2.432
	CNS0095598	Silvery flower (diploied) 1	10.478
	CNS0095599	Silvery flower (diploied) 2	7.555
	CNS0095600	Silvery flower (diploied) 3	2.943
	CNS0095601	Golden flower (diploid) 1	15.625
	CNS0095602	Golden flower (diploid) 2	4.233
	CNS0095603	Golden flower (diploid) 3	5.003
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.821
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.341
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.385
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.981
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	2.678
	CNS0095612	Silvery flower (tetraploid) 3	1.597
	CNS0095613	Golden flower (tetraploid) 1	0.090
	CNS0095614	Golden flower (tetraploid) 2	0.038
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	11.551
	CRR073298	Stem 2	6.636
	CRR073299	Stem 3	17.720
	CRR073300	Leaf 1	0.410
	CRR073301	Leaf 2	0.289
	CRR073302	Leaf 3	0.170
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.084
	CRR073305	Juvenile bud 3	0.272
	CRR073306	Third green 1	0.004
	CRR073307	Third green 2	0.002
	CRR073308	Third green 3	0.066
	CRR073309	Second white 1	0.003
	CRR073310	Second white 2	0.015
	CRR073311	Second white 3	0.005
	CRR073312	Silver flowering 1	0.006
	CRR073313	Silver flowering 2	0.007
	CRR073314	Silver flowering 3	0.004
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000