Detail information of GWHGAAZE004808


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002305661.11.0753E-142VPS28 protein 2 [Populus trichocarpa]
Swissprottr|Q9S9T7|VP282_ARATH1E-134Vacuolar protein sorting-associated protein 28 homolog 2
trEMBLtr|A9PBK3|A9PBK3_POPTR4E-143VPS28 protein 2 {ECO:0000313|EMBL:EEE86172.1}
TAIR10AT4G05000.21E-102Vacuolar protein sorting-associated protein VPS28 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene122717589122718218-
GWHAAZE00000001mRNA122717589122718218-
GWHAAZE00000001exon122717589122718218-
GWHAAZE00000001CDS122717589122718218-
Transcript Sequence

Network for GWHGAAZE004808

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03997.13VPS28182044.80E-69
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12184VPS28 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0032509biological_processendosome transport via multivesicular body sorting pathway
GO:0000813cellular_componentESCRT I complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf98.740
SRR3591706second leaf27.446
SRR3591707mature leaf33.953
SRR3591708Shoot apex45.932
SRR3591709Stem127.724
SRR3591710White floral bud158.411
SRR3591711White flower151.679
SRR3591712Green floral bud62.257
SRR3591713Yellow flower146.745
SRP173429 SRR8316895Juvenile bud stage 45.018
SRR8316896Juvenile bud stage 60.996
SRR8316897Juvenile bud stage 31.696
SRR8316894Third green stage 21.053
SRR8316900Third green stage 47.004
SRR8316901Third green stage 64.033
SRR8316898Complete white stage 135.907
SRR8316899Complete white stage 133.238
SRR8316903Complete white stage 187.395
SRR8316902Silver flowering stage177.400
SRR8316904Silver flowering stage216.893
SRR8316905Silver flowering stage115.247
SRR8316906Gold flowering stage 379.476
SRR8316907Gold flowering stage 384.974
SRR8316908Gold flowering stage 352.407
SRP132670SRR6706286Control46.446
SRR6706287Light intensity 50%54.079
SRR6706288Light intensity 20%50.098
CNP0000432CNS0095592Slightly white alabastrum(diploid) 169.272
CNS0095593Slightly white alabastrum(diploid) 274.164
CNS0095594Slightly white alabastrum(diploid) 366.704
CNS0095595Whole white alabastrum(diploid) 249.324
CNS0095596Whole white alabastrum(diploid) 335.458
CNS0095597Whole white alabastrum(diploid) 445.135
CNS0095598Silvery flower (diploied) 1148.603
CNS0095599Silvery flower (diploied) 2146.761
CNS0095600Silvery flower (diploied) 3252.431
CNS0095601Golden flower (diploid) 1137.102
CNS0095602Golden flower (diploid) 2203.408
CNS0095603Golden flower (diploid) 3194.502
CNS0095604Slightly white alabastrum(tetraploid) 140.783
CNS0095605Slightly white alabastrum(tetraploid) 232.131
CNS0095606Slightly white alabastrum(tetraploid) 355.984
CNS0095607Whole white alabastrum(tetraploid) 140.558
CNS0095608Whole white alabastrum(tetraploid) 236.856
CNS0095609Whole white alabastrum(tetraploid) 342.746
CNS0095610Silvery flower (tetraploid) 1152.736
CNS0095611Silvery flower (tetraploid) 2156.768
CNS0095612Silvery flower (tetraploid) 3461.264
CNS0095613Golden flower (tetraploid) 1191.989
CNS0095614Golden flower (tetraploid) 2144.462
CNS0095615Golden flower (tetraploid) 3382.275
CRA001975CRR073297Stem 162.493
CRR073298Stem 258.312
CRR073299Stem 367.242
CRR073300Leaf 169.896
CRR073301Leaf 280.240
CRR073302Leaf 368.311
CRR073303Juvenile bud 176.627
CRR073304Juvenile bud 283.162
CRR073305Juvenile bud 394.183
CRR073306Third green 1676.047
CRR073307Third green 2642.864
CRR073308Third green 3572.363
CRR073309Second white 1725.799
CRR073310Second white 2657.185
CRR073311Second white 3490.956
CRR073312Silver flowering 1529.300
CRR073313Silver flowering 2609.840
CRR073314Silver flowering 3431.876
CRR073315Gold flowering 180.525
CRR073316Gold flowering 296.220
CRR073317Gold flowering 371.326
CRR073318Tawny withering 1157.021
CRR073319Tawny withering 2193.760
CRR073320Tawny withering 3187.216