Detail information of GWHGAAZE004807


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002264829.10PREDICTED: tryptophan synthase beta chain 1 [Vitis vinifera]
Swissprottr|P25269|TRBP2_ARATH1E-161Tryptophan synthase beta chain 2, chloroplastic (Precursor)
trEMBLtr|F6H7L3|F6H7L3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB48171.1}
TAIR10AT5G28237.11E-139Pyridoxal-5'-phosphate-dependent enzyme family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene122698571122700653+
GWHAAZE00000001mRNA122698571122700653+
GWHAAZE00000001exon122698571122698975+
GWHAAZE00000001exon122699144122699500+
GWHAAZE00000001exon122699654122700087+
GWHAAZE00000001exon122700473122700653+
GWHAAZE00000001CDS122698571122698975+
GWHAAZE00000001CDS122699144122699500+
GWHAAZE00000001CDS122699654122700087+
GWHAAZE00000001CDS122700473122700653+
Transcript Sequence

Network for GWHGAAZE004807

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00291.26PALP1464382.20E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01696trpB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Glycine, serine and threonine metabolismmap00260
Phenylalanine, tyrosine and tryptophan biosynthesismap00400

Gene Ontology

GO term OntologyName
GO:0000162biological_processtryptophan biosynthetic process
GO:0006568biological_processtryptophan metabolic process
GO:0004834molecular_functiontryptophan synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.251
SRR3591706second leaf0.702
SRR3591707mature leaf9.762
SRR3591708Shoot apex0.408
SRR3591709Stem1.000
SRR3591710White floral bud493.856
SRR3591711White flower1128.147
SRR3591712Green floral bud24.208
SRR3591713Yellow flower888.981
SRP173429 SRR8316895Juvenile bud stage 1.466
SRR8316896Juvenile bud stage 0.439
SRR8316897Juvenile bud stage 2.870
SRR8316894Third green stage 0.171
SRR8316900Third green stage 0.062
SRR8316901Third green stage 0.054
SRR8316898Complete white stage 290.152
SRR8316899Complete white stage 9.077
SRR8316903Complete white stage 457.409
SRR8316902Silver flowering stage807.847
SRR8316904Silver flowering stage1235.358
SRR8316905Silver flowering stage692.416
SRR8316906Gold flowering stage 2104.338
SRR8316907Gold flowering stage 1981.466
SRR8316908Gold flowering stage 1672.095
SRP132670SRR6706286Control13.143
SRR6706287Light intensity 50%28.259
SRR6706288Light intensity 20%0.218
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.594
CNS0095593Slightly white alabastrum(diploid) 21.914
CNS0095594Slightly white alabastrum(diploid) 33.047
CNS0095595Whole white alabastrum(diploid) 21.373
CNS0095596Whole white alabastrum(diploid) 31.033
CNS0095597Whole white alabastrum(diploid) 42.415
CNS0095598Silvery flower (diploied) 1313.027
CNS0095599Silvery flower (diploied) 2292.765
CNS0095600Silvery flower (diploied) 31308.415
CNS0095601Golden flower (diploid) 1361.459
CNS0095602Golden flower (diploid) 2899.789
CNS0095603Golden flower (diploid) 3883.444
CNS0095604Slightly white alabastrum(tetraploid) 10.680
CNS0095605Slightly white alabastrum(tetraploid) 20.642
CNS0095606Slightly white alabastrum(tetraploid) 30.456
CNS0095607Whole white alabastrum(tetraploid) 10.753
CNS0095608Whole white alabastrum(tetraploid) 20.837
CNS0095609Whole white alabastrum(tetraploid) 30.229
CNS0095610Silvery flower (tetraploid) 1769.996
CNS0095611Silvery flower (tetraploid) 2954.862
CNS0095612Silvery flower (tetraploid) 33091.537
CNS0095613Golden flower (tetraploid) 1702.915
CNS0095614Golden flower (tetraploid) 2736.494
CNS0095615Golden flower (tetraploid) 32168.701
CRA001975CRR073297Stem 13.470
CRR073298Stem 23.249
CRR073299Stem 33.287
CRR073300Leaf 11.684
CRR073301Leaf 22.229
CRR073302Leaf 34.146
CRR073303Juvenile bud 12.255
CRR073304Juvenile bud 210.690
CRR073305Juvenile bud 32.548
CRR073306Third green 12533.132
CRR073307Third green 21609.732
CRR073308Third green 31816.873
CRR073309Second white 12994.475
CRR073310Second white 22854.092
CRR073311Second white 32537.220
CRR073312Silver flowering 11894.442
CRR073313Silver flowering 21853.266
CRR073314Silver flowering 31542.130
CRR073315Gold flowering 11.774
CRR073316Gold flowering 27.697
CRR073317Gold flowering 310.231
CRR073318Tawny withering 16.100
CRR073319Tawny withering 254.894
CRR073320Tawny withering 31.015