Gene detail

Detail information of GWHGAAZE004789

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009367095.1	5.6142E-131	PREDICTED: cysteine-rich receptor-like protein kinase 29 isoform X2 [Pyrus x bretschneideri]
Swissprot	tr\|Q9M0X5\|CRK25_ARATH	2E-54	Cysteine-rich receptor-like protein kinase 25 (Precursor)
trEMBL	tr\|F6I2E2\|F6I2E2_VITVI	1E-127	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61109.1}
TAIR10	AT4G05200.1	1E-41	cysteine-rich RLK (RECEPTOR-like protein kinase) 25

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	122299894	122301783	-
GWHAAZE00000001	mRNA	122299894	122301783	-
GWHAAZE00000001	exon	122299894	122300132	-
GWHAAZE00000001	exon	122300750	122300884	-
GWHAAZE00000001	exon	122300976	122301783	-
GWHAAZE00000001	CDS	122300976	122301783	-
GWHAAZE00000001	CDS	122300750	122300884	-
GWHAAZE00000001	CDS	122299894	122300132	-

Transcript Sequence
>GWHTAAZE004795 ATGGCAATGGTCCATCGAATTTGGCTTTTGTTCCTTTCTCAAATTCTCATACACCTAGCTGGTCTCACCGTTGCCCAGCCGAATTTCCTTTACAATTTTTGTATTGACGGAAATGGCAACTACACAAGTAACAGCGCTTACCGATCAAACCTCGACACTGCCCTCTCCTCGATATCATCAAACACCAACAATACAACAAACGGTTTCTACAGTACCTCGGTTGGCCAAAACGCTGACACGGCCAACGCACTCGCTCTCTGCAGAGGAGACATCAACCCGGACATTTGTCGTCAGTGTGTCTATAACTCCACTCTTAAGCTGAGAGAGGTTTGTCCCAACCAAAAGGAGGCCATTGGTTGGTATGACTTTTGTATGTTAAGGTACTCAAATCGCTCTATACTCCAAAACATGGAGGAATCCCCTGCTTTCGTTATGTGGAACATGAACAATGTTTCAAGCGTGGCTCAGTTCAATGAGGACCTAAGGACCTTGATAGACAGCCTAAGATCCCGAGCCGTTGATGGTGGTCCTCTTCGTAAGTTTGCCACGGGGAATGTGTCCGGCCCAGACTTTTTGACGATATATGGACTTGTGCAGTGCACTCCTGATTTATCGGAGGACGCTTGTAACAATTGCCTAGTTGGGGCGGCTAGAGGTATTCCGGGATGTTGTGATGGAAAAAGAGGCGGCAGAGTTATTAGGCCTAGCTGTAGTGTTAGGTTCGAGGTTGATCCTTTTTTCAATGAAAGTACTACTGATGCAACTCCACCAGCACCAACGCTGCCACCACTATCTCCGGCACCTCCAGGCAAGGATGATAACACGACACGGACTGTCATAATTATTGTTGTTTCGAGTGTTGTTTTTGTGATATTGCTTGTTGTTGGTTTGTGCATTTTCACAAGTAAGAGGAAGAAGAGGAAGCCAAAAGAGATAATTGAGGATCCAGTCAACAGGGTGGCGTTGGACTGGGATAGACGCTACAAAATCATAGGAGGTGTTGCTCGGGGACTTTTATATCTTCATGAGGATTCTCGACTTCGAATTATTCACCGTGATATGAAAGCTAGTAATGTTTTGTTGGATGAAGAGATGAATCCAAAAATTGCGGATTTTGGCATGGCAAGGTTGTTTGAAAGAGATGAAACCCAAGGCAATACAAGCAGGATTGTGGGGACCTAG

Network for GWHGAAZE004789

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01657.18	Stress-antifung	34	130	1.20E-20
PF01657.18	Stress-antifung	150	242	1.00E-13
PF00069.26	Pkinase	320	392	6.80E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.177
	SRR3591707	mature leaf	0.632
	SRR3591708	Shoot apex	0.122
	SRR3591709	Stem	1.274
	SRR3591710	White floral bud	0.357
	SRR3591711	White flower	0.973
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	1.649
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.025
	SRR8316897	Juvenile bud stage	0.476
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.027
	SRR8316898	Complete white stage	0.036
	SRR8316899	Complete white stage	0.142
	SRR8316903	Complete white stage	0.059
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.211
	SRR8316905	Silver flowering stage	0.075
	SRR8316906	Gold flowering stage	1.825
	SRR8316907	Gold flowering stage	0.754
	SRR8316908	Gold flowering stage	2.467
SRP132670	SRR6706286	Control	0.093
	SRR6706287	Light intensity 50%	0.139
	SRR6706288	Light intensity 20%	0.036
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.054
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.149
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.311
	CNS0095601	Golden flower (diploid) 1	0.044
	CNS0095602	Golden flower (diploid) 2	0.014
	CNS0095603	Golden flower (diploid) 3	0.296
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.133
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.083
	CNS0095610	Silvery flower (tetraploid) 1	0.337
	CNS0095611	Silvery flower (tetraploid) 2	0.079
	CNS0095612	Silvery flower (tetraploid) 3	0.716
	CNS0095613	Golden flower (tetraploid) 1	0.391
	CNS0095614	Golden flower (tetraploid) 2	1.198
	CNS0095615	Golden flower (tetraploid) 3	0.170
CRA001975	CRR073297	Stem 1	0.054
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.082
	CRR073301	Leaf 2	0.019
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.016
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.016
	CRR073310	Second white 2	0.441
	CRR073311	Second white 3	0.170
	CRR073312	Silver flowering 1	0.492
	CRR073313	Silver flowering 2	0.039
	CRR073314	Silver flowering 3	0.306
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.234
	CRR073318	Tawny withering 1	0.349
	CRR073319	Tawny withering 2	1.773
	CRR073320	Tawny withering 3	0.093