Gene detail

Detail information of GWHGAAZE004788

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088709.1	1.32782E-87	PREDICTED: putative receptor-like protein kinase At5g39000 isoform X2 [Sesamum indicum]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	1E-74	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A022RKA8\|A0A022RKA8_ERYGU	4E-84	Uncharacterized protein {ECO:0000313\|EMBL:EYU40178.1} (Fragment)
TAIR10	AT3G51550.1	5E-68	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	122272895	122277761	-
GWHAAZE00000001	mRNA	122272895	122277761	-
GWHAAZE00000001	exon	122272895	122273136	-
GWHAAZE00000001	exon	122275060	122275602	-
GWHAAZE00000001	exon	122275744	122276370	-
GWHAAZE00000001	exon	122276998	122277070	-
GWHAAZE00000001	exon	122277621	122277761	-
GWHAAZE00000001	CDS	122277621	122277761	-
GWHAAZE00000001	CDS	122276998	122277070	-
GWHAAZE00000001	CDS	122275744	122276370	-
GWHAAZE00000001	CDS	122275060	122275602	-
GWHAAZE00000001	CDS	122272895	122273136	-

Transcript Sequence
>GWHTAAZE004794 ATGACTTCGACTGCTTTGATGCTTAGTAACTTCTCTTTCACTCTTCCGGTGCCTTCAGAGCCGGCATTTTTCATGCACAGCAGTGTCGTTGATCCGGAAAAGCCGCTGTTTGGGGTTATAATTCGGGGACAAGCGAGTCCACTTACACTAGGCCAGCACTGCGAGGAGCATGGAACTCCTGTTCTGTTATTTAATGTTTGTGACAAAGGAGTAGGTCCAATCTCTCTGCTTTCTTCTTTAAAGCTTCCAAAATTTGTGTCCCCTTTTGGCCCCCTGAACGTAATTGCAACTGGTGTGATAATTGTAATCACCCTATTGAATATCATTGTTTATAAATTGGCGGAACCATACCATGGCTCAAGCCAACCACTTCCAGAAGAAGCAGACCTTGGAGAGAAAGCAAGTAACAAGTTCCCCTTGGCATCAGAACTAGTGCCTCGTCGTTTTTCACTTCCGGGAATCTTATCTGCCACCCAAAACTTCGATGATTCAAAGGTCATTGGGAGAGGCGGATTTGGCAAGGTGTACAAAGGGGTTCTTGACGATGGGGCTATTACTGTTGCGATTAAGCGTTTGAATCACATGTCCAAACAAGGAGCCGTTGAATTTCTTACTGAGATTGAGATGCTTTCAAAATTTCGGCACCATAATCTTATATCTCTTATCGGCTTTTGCGACGACTGTGATGAAATGATCCTTGTTTATCAATATATGGAGCGCGGAGCCCTAGCTGGTCATCTTTACAAAATTGATAGAAGTGCTAATAATTCCGCTCTATCTTGGGTACAACGGCTCAAGATTTGCATAGGGACTGCACGTGGTTTGGAGTACCTTCACACAGGCACAAGAGGATATGTGGATCCAGAGTATATTTTGACTCATAAACTAACAAAGAAGTCCGATGTTTACTCCTTTGGCGTTGTACTGTTTGAAGTGCTTTCTGGAAGACCAGCAGTTGATTCAACACGACCTGAGGACCAATGGGGTCTCGCTTTCTGGGCTCAACGTTGCATCAAAGAAGAAACTATAAACAAAATTGTTGATCCCAATTTGCGTTGCCAAATATTGCCGAATTCGTTGGCTTTGTTTGCCAAAATTGCCAATCGTTGTGTTCATTTCCGTTCCACAAAGCGGCCTACAATGGCTGAAGTAGTCACCTCACTTGAGTCTGCACTGGCATGGCAAGAGAGAATAGACTCTTCAATGTTTGATCAGTATATGTTAAGTATGGGTGGGAATTTTGGCAATCAAGATATTGTGGATAGTTCCTCAGAAGATGAGGTTATCCATTCAGATAGTGGCCAGCATCTTGAGGAGCAAATTGATAACACTCAACAAAAGATTGTGGATTATTCCTCAACACAACATAAGGTTACCCAGTTCGATCCAATCAGAAGTAGTTATTTGGATTGGAATACACGCTACAAAATCATAGGAAGTATTGCTCGGGGGCTTTTGTATCTTCATGAAGATTCTCGCCTTCGAATTCTTCACCGTGGTATCAAAGCTAGCAATGTTCTATTAGATGCAGAGATGAATCCCAAAATTTCGGACTTTGGTACAGCATTGTTAGTTGAAAGGGATCAAACAGATGTCAGTACAACTAGAACTGTGGGGAATTGGTAA

Network for GWHGAAZE004788

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	164	280	2.90E-21
PF07714.18	PK_Tyr_Ser-Thr	285	388	2.50E-10
PF00069.26	Pkinase	467	534	1.20E-10

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.159
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.041
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.101
	SRR3591710	White floral bud	0.015
	SRR3591711	White flower	0.506
	SRR3591712	Green floral bud	0.269
	SRR3591713	Yellow flower	0.049
SRP173429	SRR8316895	Juvenile bud stage	0.575
	SRR8316896	Juvenile bud stage	0.714
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.246
	SRR8316900	Third green stage	0.219
	SRR8316901	Third green stage	0.559
	SRR8316898	Complete white stage	0.081
	SRR8316899	Complete white stage	0.383
	SRR8316903	Complete white stage	0.038
	SRR8316902	Silver flowering stage	0.044
	SRR8316904	Silver flowering stage	0.125
	SRR8316905	Silver flowering stage	0.017
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.179
	SRR6706287	Light intensity 50%	0.277
	SRR6706288	Light intensity 20%	0.188
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.216
	CNS0095593	Slightly white alabastrum(diploid) 2	0.585
	CNS0095594	Slightly white alabastrum(diploid) 3	0.389
	CNS0095595	Whole white alabastrum(diploid) 2	0.090
	CNS0095596	Whole white alabastrum(diploid) 3	0.182
	CNS0095597	Whole white alabastrum(diploid) 4	0.251
	CNS0095598	Silvery flower (diploied) 1	0.506
	CNS0095599	Silvery flower (diploied) 2	0.417
	CNS0095600	Silvery flower (diploied) 3	0.138
	CNS0095601	Golden flower (diploid) 1	0.009
	CNS0095602	Golden flower (diploid) 2	0.643
	CNS0095603	Golden flower (diploid) 3	0.390
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.032
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.122
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.036
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.083
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.023
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.092
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.316
	CRR073298	Stem 2	0.313
	CRR073299	Stem 3	0.154
	CRR073300	Leaf 1	0.197
	CRR073301	Leaf 2	0.282
	CRR073302	Leaf 3	0.276
	CRR073303	Juvenile bud 1	0.053
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.028
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.151
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.085
	CRR073319	Tawny withering 2	0.198
	CRR073320	Tawny withering 3	0.000