Gene detail

Detail information of GWHGAAZE004766

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN61487.1	0	hypothetical protein VITISV_038128 [Vitis vinifera]
Swissprot	tr\|Q9LPZ3\|Y1141_ARATH	2E-166	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 (Precursor)
trEMBL	tr\|A5BKS7\|A5BKS7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN61487.1}
TAIR10	AT1G11410.1	1E-131	S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	121829967	121833440	+
GWHAAZE00000001	mRNA	121829967	121833440	+
GWHAAZE00000001	exon	121829967	121831260	+
GWHAAZE00000001	exon	121831512	121831637	+
GWHAAZE00000001	exon	121831932	121832134	+
GWHAAZE00000001	exon	121832658	121832795	+
GWHAAZE00000001	exon	121833135	121833440	+
GWHAAZE00000001	CDS	121829967	121831260	+
GWHAAZE00000001	CDS	121831512	121831637	+
GWHAAZE00000001	CDS	121831932	121832134	+
GWHAAZE00000001	CDS	121832658	121832795	+
GWHAAZE00000001	CDS	121833135	121833440	+

Transcript Sequence
>GWHTAAZE004772 ATGTTTCTTGGAAAAAAGCTTGTGTGTACTTCCCTTGTATTTCTTCTACTTCCATTTTCAACTCCACTGGACACCATCACTGCAAACACATCCCTCAAAGACGGCGATCTTTTAGTCTCTGAAGGACAAAACTTTACCCTCGGATTCTTCAGCCCCAGTAATTCTACCAGTAACCGGTACGTGGGTGTTTGGTACAACAAAGTTCCAGAACAAACCGTAGTTTGGGTTCTCAACAGAGACAATCCAGTTAATGGCACCGTTGGAATTCTCTCTATCAGTACACTTGGAAATCTCGCCTTACTCGACCAAAATCTAGATGTTCCAATCTGGTCGACTAACGTTTCAGCCACGACTAATCCTTGTTTGGCTCAGCTTTTAGATACGGGAAATTTGGTGTTGTATCACGGTGATGATAGTAAGAAGTTTATTGCATGGCAAGGCTTTGATTATCCTACAAATACCATGCTCCCCAATATGAAACTCGGGTTTGACAAAAGGACCAGCCTGAACCGGTTCTTGACATCTTGGAAGTCACCGGAGGATCCTGGAACCGGTGAGTACTCCTACAAAATGGACCTTTCTGGGTTGCCCCAGTTGTTTTTATACAAGGGTTCAACTCGGATCTGGCGAACCGGACCTTGGAATGGGGTTAGATGGAGTGGTGTACCTGAGATGACAAACAAATTCATCTTCAATCCTAGTTACATCGACAATCACGATGAAGTCTCAGTGATGTACAGTTTATATAACACCTCGATTTTCTCAATGTTAATGGTGAACGAGTCTGGTACTCTAGAAAGGCAGACGTGGCACGATGGCATAGGTAGATGGGTTGAGTTCTGGTCTGCACCAAAGGACCAGTGCGACCATTATGGCAATTGTGGCGCATTTGGCTACTGTGAACCAAATACCAATGCGGGCGAGTTCCAGTGCACATGCGTGATAGGGTATGAGCCAAAGTCGGCACGCGACTGGTACCTGAGGGACGGGTCTGCTGGGTGCGTGAGGAAACGTGGGGGGAAAGGGTGTGGAAATGGCGACGGGTTTGTAAAGGTGGCACGCGTGAAAGTACCAGACACGTCTAGGAGTACACATGTGAATGAGAGTTTAGGGATGAAAGCGTGTGAGGAATGGTGCTTGAGGAACTGCACGTGTGTGGGGTACACGAGTGCTGATATTAGTAAAGGAGAAGGAGGAAGTGGTTGTGTTAGTTGGCATGGAGAGATGATAGATACAAGGCAGTTTTCAAATGGGGGCCAAGATTTGTACATTCGTGTTGATGCAATTGAGTTAGCTCAATACTCGAGAAAGAATAAAAGATTTCATGGCAAACAGCTGGTGGAAATTATTGTGCCATCCCTTGCTGCAGTTGTTCTCTTACTTTGCTTGGCATATTGGTTGTTGAGGAAGAAGAGGAGAGGTAGAAGAGAACAAGAGGACCTGTTATTCAGTCCTAGCGCGGCTTCAATTCCTTTTGAAAATTCTCCAATGGGAAAGGAGGTTGTTGAAAGCGGAACAAATGCAGATTTACCGTTCTTTTCTCTAAGCACCATAGTTACTTCCACAGACAATTTCTCCTTAGCTAACAAACTTGGACAAGGTGGTTTTGGCTCTGTTTATAAGGACTCAAGATTACGGATCATCCATAGGGATCTAAAGGCTAGCAATGTTTTACTAGATGTGTCCATGAACCCGAAAATATCAGACTTTGGTATGGCTAGAATATTTGGAGGGGAGCAAATGGAAGCAACCACAAATAGAGTTTGGGATCTTTGGGGAGAAGGCAGAGCCTTGGAAATAGTTGATTCATCAATGGGCAAATCGTATGAAGAGCGCGAAGTTATGAGATGCATTCACATTGGGCTTTTGTGCTTGCAAGAATTAGCAATAGATCGTCCCACAATGTCTGAAGTAGCTTTTATGTTGTGCCATGAGACGAGTCTTTCCTCTCCTAAACAACCCGCCTTTATTTTTAAGAAAGGGAATTTTGGACAGGACTCGTCATCGGCTAGTGTGGGAGCCGTTTCTGTTTATGATGAAACAATTACTAGGGTTGAAGCTCGCTAA

Network for GWHGAAZE004766

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	72	177	7.30E-34
PF00954.21	S_locus_glycop	209	321	2.30E-30
PF08276.12	PAN_2	343	412	3.40E-18
PF00069.26	Pkinase	546	581	2.70E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0048544	biological_process	recognition of pollen
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.704
	SRR3591706	second leaf	35.350
	SRR3591707	mature leaf	21.578
	SRR3591708	Shoot apex	23.306
	SRR3591709	Stem	43.219
	SRR3591710	White floral bud	12.166
	SRR3591711	White flower	9.999
	SRR3591712	Green floral bud	15.383
	SRR3591713	Yellow flower	7.985
SRP173429	SRR8316895	Juvenile bud stage	16.820
	SRR8316896	Juvenile bud stage	18.244
	SRR8316897	Juvenile bud stage	9.581
	SRR8316894	Third green stage	5.291
	SRR8316900	Third green stage	11.762
	SRR8316901	Third green stage	15.959
	SRR8316898	Complete white stage	1.713
	SRR8316899	Complete white stage	25.579
	SRR8316903	Complete white stage	3.239
	SRR8316902	Silver flowering stage	0.988
	SRR8316904	Silver flowering stage	1.675
	SRR8316905	Silver flowering stage	0.570
	SRR8316906	Gold flowering stage	3.955
	SRR8316907	Gold flowering stage	3.541
	SRR8316908	Gold flowering stage	3.385
SRP132670	SRR6706286	Control	4.697
	SRR6706287	Light intensity 50%	6.234
	SRR6706288	Light intensity 20%	5.745
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.633
	CNS0095593	Slightly white alabastrum(diploid) 2	14.813
	CNS0095594	Slightly white alabastrum(diploid) 3	12.698
	CNS0095595	Whole white alabastrum(diploid) 2	11.264
	CNS0095596	Whole white alabastrum(diploid) 3	3.427
	CNS0095597	Whole white alabastrum(diploid) 4	7.425
	CNS0095598	Silvery flower (diploied) 1	14.179
	CNS0095599	Silvery flower (diploied) 2	13.316
	CNS0095600	Silvery flower (diploied) 3	7.356
	CNS0095601	Golden flower (diploid) 1	16.301
	CNS0095602	Golden flower (diploid) 2	12.477
	CNS0095603	Golden flower (diploid) 3	11.303
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.130
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.554
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.643
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.128
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.005
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.850
	CNS0095610	Silvery flower (tetraploid) 1	4.382
	CNS0095611	Silvery flower (tetraploid) 2	2.609
	CNS0095612	Silvery flower (tetraploid) 3	0.789
	CNS0095613	Golden flower (tetraploid) 1	3.607
	CNS0095614	Golden flower (tetraploid) 2	3.020
	CNS0095615	Golden flower (tetraploid) 3	2.217
CRA001975	CRR073297	Stem 1	8.311
	CRR073298	Stem 2	6.919
	CRR073299	Stem 3	3.309
	CRR073300	Leaf 1	13.479
	CRR073301	Leaf 2	11.690
	CRR073302	Leaf 3	8.457
	CRR073303	Juvenile bud 1	5.420
	CRR073304	Juvenile bud 2	5.549
	CRR073305	Juvenile bud 3	7.276
	CRR073306	Third green 1	2.028
	CRR073307	Third green 2	0.953
	CRR073308	Third green 3	1.355
	CRR073309	Second white 1	0.209
	CRR073310	Second white 2	0.028
	CRR073311	Second white 3	0.419
	CRR073312	Silver flowering 1	0.337
	CRR073313	Silver flowering 2	0.562
	CRR073314	Silver flowering 3	0.592
	CRR073315	Gold flowering 1	6.306
	CRR073316	Gold flowering 2	15.578
	CRR073317	Gold flowering 3	7.412
	CRR073318	Tawny withering 1	14.453
	CRR073319	Tawny withering 2	16.142
	CRR073320	Tawny withering 3	11.826