Gene detail

Detail information of GWHGAAZE004729

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008230093.1	0	PREDICTED: bifunctional riboflavin kinase/FMN phosphatase-like [Prunus mume]
Swissprot	tr\|Q84MD8\|FHYRK_ARATH	0	Riboflavin kinase
trEMBL	tr\|B9SFB1\|B9SFB1_RICCO	0	Riboflavin kinase/fmn adenylyltransferase, putative {ECO:0000313\|EMBL:EEF37699.1}
TAIR10	AT4G21470.1	4E-161	riboflavin kinase/FMN hydrolase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	121278571	121288331	+
GWHAAZE00000001	mRNA	121278571	121288331	+
GWHAAZE00000001	exon	121278571	121278646	+
GWHAAZE00000001	exon	121278846	121279032	+
GWHAAZE00000001	exon	121279823	121279953	+
GWHAAZE00000001	exon	121282340	121282409	+
GWHAAZE00000001	exon	121282526	121282591	+
GWHAAZE00000001	exon	121286984	121287138	+
GWHAAZE00000001	exon	121287227	121287322	+
GWHAAZE00000001	exon	121287489	121287640	+
GWHAAZE00000001	exon	121288001	121288084	+
GWHAAZE00000001	exon	121288173	121288331	+
GWHAAZE00000001	CDS	121278571	121278646	+
GWHAAZE00000001	CDS	121278846	121279032	+
GWHAAZE00000001	CDS	121279823	121279953	+
GWHAAZE00000001	CDS	121282340	121282409	+
GWHAAZE00000001	CDS	121282526	121282591	+
GWHAAZE00000001	CDS	121286984	121287138	+
GWHAAZE00000001	CDS	121287227	121287322	+
GWHAAZE00000001	CDS	121287489	121287640	+
GWHAAZE00000001	CDS	121288001	121288084	+
GWHAAZE00000001	CDS	121288173	121288331	+

Transcript Sequence
>GWHTAAZE004735 ATGTCGATGGCAAATCCTTTGAAGAAGTTGGTATCGTGTGTTATCCTTGACTTGGACGGTACACTACTTAACACAGATGGCATTGTAAATGATGTTTTAAAAGTTTTCTTGGTTAAGTATGGAAAGCAATTGGATGGGAAAGCAGCTGGTAGAATAGTAGGAAAGACACCTTCAGAAGCTGCGGCTGCTATTGTGGAAGATTACGAGCTTCCTTTGTCAACAGATGAATTTATTTCCGAAATTACCCCCATGTTCTCCGATCAATGGTGCAACATCAAAGCTCTTCCAGGTGCCAATCGGCTAATCAAACATCTTAGGGGCCACGGCGTGCAAATGGCATTGGCTTCGAACTCTCCAAGGGAAGGCATTGAAACCAAAATATCTTATCATTCTGGCTGGAAAGAGTCCTTCTCTGTCGTAATTGCTGGTGATGAAGTAAAAGCAGGAAAGCCATCTCCTGAAATATTCCTTGAAGTAGCTAAACGGCTACACAGTGATCCTTCTGAGTGTCTCGTCATTGAAGACTCACTACCAGGTGTTACAGCTGGTAAGGCTGCTAAAATGGAAGTGGTTGCTGTTCCGTCTCTTCCAAAACAATCTCATCTTTACATTTCAGCAGACGAGGTGATCAATTCCCTTCTTGATTTGCGACCTGAAAAATGGGGCCTACCTCCATTTCAAGATTGGATAGAGGGTACTTTACCAATAGAAACTTGGTATATTGGAGGTCCTGTTATTAAAGGCTTTGGCCGTGGCTCAAAGGTGCTTGGAATACCTACAGCTAATTTATCCATAGAAGCGTATTCAAATATCCTCTCAGAACATCCCTCTGGTGTTTATTTTGGTTGGGCCGGATTATCAACGCGAGGCGTTTACAAGATGGTCATGAGTATTGGATGGAACCCATATTTCGACAACACCGAGAAGACCATAGAGCCATGGTTGCTTCATGACTTTGATGGAGATTTCTATGGCGAGGAATTACGTCTTACTATTGTTGGCTATATACGGCCTGAGGCTAATTTCCCATCGCTTGAAAGCCTGATAACGAAGATTCACGAGGACAGGAAAATTGCAGAGAATGCCCTCGAACTTCCCGCGTACTCGAAGTACAGGTCTGATCCATATCTGAAAAGCTCCATTCACGATGATAGCAGTCATTTGCAACTTAATTAA

Network for GWHGAAZE004729

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13419.7	HAD_2	14	193	3.10E-25
PF01687.18	Flavokinase	239	363	4.30E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20884	FHY	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Riboflavin metabolism	map00740

Gene Ontology

GO term	Ontology	Name
GO:0009231	biological_process	riboflavin biosynthetic process
GO:0008531	molecular_function	riboflavin kinase activity
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.267
	SRR3591706	second leaf	18.154
	SRR3591707	mature leaf	16.961
	SRR3591708	Shoot apex	23.760
	SRR3591709	Stem	31.027
	SRR3591710	White floral bud	55.426
	SRR3591711	White flower	92.616
	SRR3591712	Green floral bud	38.842
	SRR3591713	Yellow flower	81.508
SRP173429	SRR8316895	Juvenile bud stage	23.329
	SRR8316896	Juvenile bud stage	32.490
	SRR8316897	Juvenile bud stage	12.299
	SRR8316894	Third green stage	13.674
	SRR8316900	Third green stage	43.979
	SRR8316901	Third green stage	41.391
	SRR8316898	Complete white stage	21.270
	SRR8316899	Complete white stage	44.128
	SRR8316903	Complete white stage	33.051
	SRR8316902	Silver flowering stage	19.065
	SRR8316904	Silver flowering stage	27.068
	SRR8316905	Silver flowering stage	13.906
	SRR8316906	Gold flowering stage	41.854
	SRR8316907	Gold flowering stage	58.039
	SRR8316908	Gold flowering stage	33.189
SRP132670	SRR6706286	Control	18.960
	SRR6706287	Light intensity 50%	21.405
	SRR6706288	Light intensity 20%	23.975
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.369
	CNS0095593	Slightly white alabastrum(diploid) 2	36.940
	CNS0095594	Slightly white alabastrum(diploid) 3	27.274
	CNS0095595	Whole white alabastrum(diploid) 2	29.573
	CNS0095596	Whole white alabastrum(diploid) 3	30.377
	CNS0095597	Whole white alabastrum(diploid) 4	25.722
	CNS0095598	Silvery flower (diploied) 1	25.520
	CNS0095599	Silvery flower (diploied) 2	29.100
	CNS0095600	Silvery flower (diploied) 3	42.144
	CNS0095601	Golden flower (diploid) 1	23.329
	CNS0095602	Golden flower (diploid) 2	31.069
	CNS0095603	Golden flower (diploid) 3	28.140
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.316
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.247
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.415
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.629
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.163
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.928
	CNS0095610	Silvery flower (tetraploid) 1	31.247
	CNS0095611	Silvery flower (tetraploid) 2	31.891
	CNS0095612	Silvery flower (tetraploid) 3	36.846
	CNS0095613	Golden flower (tetraploid) 1	12.816
	CNS0095614	Golden flower (tetraploid) 2	20.479
	CNS0095615	Golden flower (tetraploid) 3	12.706
CRA001975	CRR073297	Stem 1	27.129
	CRR073298	Stem 2	25.065
	CRR073299	Stem 3	24.857
	CRR073300	Leaf 1	35.581
	CRR073301	Leaf 2	33.405
	CRR073302	Leaf 3	35.289
	CRR073303	Juvenile bud 1	40.418
	CRR073304	Juvenile bud 2	32.481
	CRR073305	Juvenile bud 3	38.314
	CRR073306	Third green 1	19.178
	CRR073307	Third green 2	17.765
	CRR073308	Third green 3	17.546
	CRR073309	Second white 1	28.361
	CRR073310	Second white 2	25.000
	CRR073311	Second white 3	21.098
	CRR073312	Silver flowering 1	11.872
	CRR073313	Silver flowering 2	10.892
	CRR073314	Silver flowering 3	9.733
	CRR073315	Gold flowering 1	15.325
	CRR073316	Gold flowering 2	19.913
	CRR073317	Gold flowering 3	11.533
	CRR073318	Tawny withering 1	17.237
	CRR073319	Tawny withering 2	17.804
	CRR073320	Tawny withering 3	18.820