Detail information of GWHGAAZE004727


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002270943.20PREDICTED: sphingosine kinase 1 isoform X1 [Vitis vinifera]
Swissprottr|Q8L7L1|SPHK1_ARATH0Sphingosine kinase 1
trEMBLtr|F6H7U2|F6H7U2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB48284.1}
TAIR10AT4G21540.17E-161sphingosine kinase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene121250920121256298-
GWHAAZE00000001mRNA121250920121256298-
GWHAAZE00000001exon121255849121256298-
GWHAAZE00000001exon121254985121255107-
GWHAAZE00000001exon121254805121254878-
GWHAAZE00000001exon121253956121254028-
GWHAAZE00000001exon121252967121253053-
GWHAAZE00000001exon121252762121252839-
GWHAAZE00000001exon121252417121252487-
GWHAAZE00000001exon121251905121252189-
GWHAAZE00000001exon121251564121251686-
GWHAAZE00000001exon121250920121251111-
GWHAAZE00000001five_prime_UTR121256177121256298-
GWHAAZE00000001CDS121255849121256176-
GWHAAZE00000001CDS121254985121255107-
GWHAAZE00000001CDS121254805121254878-
GWHAAZE00000001CDS121253956121254028-
GWHAAZE00000001CDS121252967121253053-
GWHAAZE00000001CDS121252762121252839-
GWHAAZE00000001CDS121252417121252487-
GWHAAZE00000001CDS121251905121252189-
GWHAAZE00000001CDS121251564121251686-
GWHAAZE00000001CDS121250920121251111-
Transcript Sequence

Network for GWHGAAZE004727

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00781.25DAGK_cat1142391.10E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04718SPHK Metabolic pathways map01100
Sphingolipid metabolismmap00600
VEGF signaling pathwaymap04370
Apelin signaling pathwaymap04371
Calcium signaling pathwaymap04020
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
Fc gamma R-mediated phagocytosismap04666

Gene Ontology

GO term OntologyName
GO:0016301molecular_functionkinase activity
GO:0003951molecular_functionNAD+ kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.822
SRR3591706second leaf5.284
SRR3591707mature leaf13.389
SRR3591708Shoot apex6.570
SRR3591709Stem21.832
SRR3591710White floral bud17.947
SRR3591711White flower28.224
SRR3591712Green floral bud11.755
SRR3591713Yellow flower31.286
SRP173429 SRR8316895Juvenile bud stage 7.693
SRR8316896Juvenile bud stage 12.317
SRR8316897Juvenile bud stage 5.940
SRR8316894Third green stage 3.542
SRR8316900Third green stage 7.642
SRR8316901Third green stage 9.037
SRR8316898Complete white stage 10.186
SRR8316899Complete white stage 15.496
SRR8316903Complete white stage 13.226
SRR8316902Silver flowering stage20.576
SRR8316904Silver flowering stage20.104
SRR8316905Silver flowering stage10.098
SRR8316906Gold flowering stage 33.001
SRR8316907Gold flowering stage 36.001
SRR8316908Gold flowering stage 39.288
SRP132670SRR6706286Control11.770
SRR6706287Light intensity 50%11.275
SRR6706288Light intensity 20%9.933
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.050
CNS0095593Slightly white alabastrum(diploid) 29.279
CNS0095594Slightly white alabastrum(diploid) 311.520
CNS0095595Whole white alabastrum(diploid) 27.814
CNS0095596Whole white alabastrum(diploid) 37.301
CNS0095597Whole white alabastrum(diploid) 47.782
CNS0095598Silvery flower (diploied) 121.325
CNS0095599Silvery flower (diploied) 214.371
CNS0095600Silvery flower (diploied) 323.616
CNS0095601Golden flower (diploid) 112.322
CNS0095602Golden flower (diploid) 226.492
CNS0095603Golden flower (diploid) 328.283
CNS0095604Slightly white alabastrum(tetraploid) 19.520
CNS0095605Slightly white alabastrum(tetraploid) 27.245
CNS0095606Slightly white alabastrum(tetraploid) 37.469
CNS0095607Whole white alabastrum(tetraploid) 16.808
CNS0095608Whole white alabastrum(tetraploid) 26.470
CNS0095609Whole white alabastrum(tetraploid) 38.871
CNS0095610Silvery flower (tetraploid) 122.096
CNS0095611Silvery flower (tetraploid) 216.793
CNS0095612Silvery flower (tetraploid) 319.935
CNS0095613Golden flower (tetraploid) 116.561
CNS0095614Golden flower (tetraploid) 222.571
CNS0095615Golden flower (tetraploid) 322.783
CRA001975CRR073297Stem 17.805
CRR073298Stem 27.137
CRR073299Stem 36.040
CRR073300Leaf 17.376
CRR073301Leaf 27.133
CRR073302Leaf 37.515
CRR073303Juvenile bud 16.913
CRR073304Juvenile bud 26.854
CRR073305Juvenile bud 38.396
CRR073306Third green 122.735
CRR073307Third green 226.990
CRR073308Third green 321.041
CRR073309Second white 114.652
CRR073310Second white 215.072
CRR073311Second white 318.429
CRR073312Silver flowering 114.657
CRR073313Silver flowering 211.911
CRR073314Silver flowering 39.187
CRR073315Gold flowering 117.006
CRR073316Gold flowering 223.196
CRR073317Gold flowering 34.929
CRR073318Tawny withering 111.962
CRR073319Tawny withering 216.631
CRR073320Tawny withering 313.642