Gene detail

Detail information of GWHGAAZE004715

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011027928.1	7.7396E-179	PREDICTED: PAP-specific phosphatase HAL2-like isoform X2 [Populus euphratica]
Swissprot	tr\|Q38945\|DPNPH_ARATH	2E-144	PAP-specific phosphatase HAL2-like
trEMBL	tr\|B9HYY6\|B9HYY6_POPTR	3E-179	Uncharacterized protein {ECO:0000313\|EMBL:EEE97847.2}
TAIR10	AT5G54390.1	3E-111	HAL2-like

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	121139710	121142339	-
GWHAAZE00000001	mRNA	121139710	121142339	-
GWHAAZE00000001	exon	121139710	121140013	-
GWHAAZE00000001	exon	121140511	121140670	-
GWHAAZE00000001	exon	121140728	121141214	-
GWHAAZE00000001	exon	121142265	121142339	-
GWHAAZE00000001	CDS	121142265	121142339	-
GWHAAZE00000001	CDS	121140728	121141214	-
GWHAAZE00000001	CDS	121140511	121140670	-
GWHAAZE00000001	CDS	121139710	121140013	-

Transcript Sequence
>GWHTAAZE004721 ATGGAAATTCAAATGGAGGGTGGTCAGTTTCCTTTAGAGACTACTGACAACTATTCCAAAGAATTGGAAGTTGCTAAAATATGCGCTGTAACAGATTGGAGCGTGCAAGCAACTGTGAGCTGGGTACTATCCGAGGCTTTTGGGAGTCAAAATGTCTCTGTTGTTGCTGAAGAAGATGTTCAAGCACTCTCCAATCCCAATTCAACCACCGTCCTAGAAGCTGTGGTGAAAACAGTGAACAACTGTTTGGCTGAGGCACCCCGTTTTGGACTTAAACCTCCTGTTATGCCTCTTGGACCTGCAGAAGTCCTTGAGGCCATTGGACGATGCAACTCAAGTGGCGGACCAACAGGACGGTTTTGGGTACTCGATCCCGTTGATGGCACATTGGGGTTTGTGCGTGGGGATCAATATGCCGTTGCTTTGGCGTTAATAGAAGGTGGAGAAGTTGTGCTTGGAGTTCTTGGGTGCCCTAATTATCCAATGAAGAAGGAAATGCTAAGTTACCATAACGGGTATCGCAGACTTGTTGCTAAGTTGACTCCACCAAACCGAATCTTGGTTAATGCATGGAGAGAGCAATTTGCGTGGCCAAACTCGGCGAGGAAGATCCAAGTGTCTTCAATCGATGATCCATCATTAGCGACGTTTTGTGAACCAGTTGAGAAGGCGAATTCAAGCCATTCCTTCACTGCAGGATTAGCTCACACTGTTGGGGTTAGGAACCAGCCATTACGTGTATATAGCATGGTGAAGTATGCAGCCATTGCCCGTGGGGACGCCGAGATTTTCATGAAGTTTGCAAGGGCCGGGTACAAGGAAAAAATATGGGATCATGCAGCTGGTGTTGTTATCATCCAAGAAGCCGGTGGTGTGGTAACTGATGCTGGAGGCCATCCACTTGACTTCTCAAAAGGTATTTATTTGCAAGGACTTGATCGAGGAATAATTGCCTGTGCTGGACCCAAACTACACGAGAAGATCATCAGGGCGGTGGATGCTAGCTGGAACTCCTCTAGCCTATGA

Network for GWHGAAZE004715

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00459.26	Inositol_P	31	336	8.30E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01082	cysQ, MET22, BPNT1	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Sulfur metabolism	map00920

Gene Ontology

GO term	Ontology	Name
GO:0046854	biological_process	phosphatidylinositol phosphorylation
GO:0006790	biological_process	sulfur compound metabolic process
GO:0008441	molecular_function	3'(2'),5'-bisphosphate nucleotidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.831
	SRR3591706	second leaf	12.640
	SRR3591707	mature leaf	24.979
	SRR3591708	Shoot apex	12.612
	SRR3591709	Stem	17.727
	SRR3591710	White floral bud	17.029
	SRR3591711	White flower	21.751
	SRR3591712	Green floral bud	12.133
	SRR3591713	Yellow flower	19.424
SRP173429	SRR8316895	Juvenile bud stage	7.664
	SRR8316896	Juvenile bud stage	8.547
	SRR8316897	Juvenile bud stage	4.059
	SRR8316894	Third green stage	4.800
	SRR8316900	Third green stage	14.661
	SRR8316901	Third green stage	13.322
	SRR8316898	Complete white stage	12.136
	SRR8316899	Complete white stage	19.885
	SRR8316903	Complete white stage	15.159
	SRR8316902	Silver flowering stage	13.446
	SRR8316904	Silver flowering stage	16.350
	SRR8316905	Silver flowering stage	8.539
	SRR8316906	Gold flowering stage	32.226
	SRR8316907	Gold flowering stage	25.722
	SRR8316908	Gold flowering stage	32.594
SRP132670	SRR6706286	Control	14.463
	SRR6706287	Light intensity 50%	13.916
	SRR6706288	Light intensity 20%	13.334
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.948
	CNS0095593	Slightly white alabastrum(diploid) 2	7.709
	CNS0095594	Slightly white alabastrum(diploid) 3	6.986
	CNS0095595	Whole white alabastrum(diploid) 2	6.852
	CNS0095596	Whole white alabastrum(diploid) 3	6.221
	CNS0095597	Whole white alabastrum(diploid) 4	4.845
	CNS0095598	Silvery flower (diploied) 1	18.735
	CNS0095599	Silvery flower (diploied) 2	12.930
	CNS0095600	Silvery flower (diploied) 3	19.665
	CNS0095601	Golden flower (diploid) 1	13.537
	CNS0095602	Golden flower (diploid) 2	19.688
	CNS0095603	Golden flower (diploid) 3	17.490
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.253
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.779
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.137
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.799
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.293
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.526
	CNS0095610	Silvery flower (tetraploid) 1	22.893
	CNS0095611	Silvery flower (tetraploid) 2	19.583
	CNS0095612	Silvery flower (tetraploid) 3	38.394
	CNS0095613	Golden flower (tetraploid) 1	26.026
	CNS0095614	Golden flower (tetraploid) 2	25.372
	CNS0095615	Golden flower (tetraploid) 3	35.933
CRA001975	CRR073297	Stem 1	16.711
	CRR073298	Stem 2	16.350
	CRR073299	Stem 3	17.524
	CRR073300	Leaf 1	18.188
	CRR073301	Leaf 2	15.646
	CRR073302	Leaf 3	16.137
	CRR073303	Juvenile bud 1	17.068
	CRR073304	Juvenile bud 2	15.979
	CRR073305	Juvenile bud 3	20.418
	CRR073306	Third green 1	52.435
	CRR073307	Third green 2	34.935
	CRR073308	Third green 3	40.563
	CRR073309	Second white 1	57.077
	CRR073310	Second white 2	43.341
	CRR073311	Second white 3	56.641
	CRR073312	Silver flowering 1	46.100
	CRR073313	Silver flowering 2	41.848
	CRR073314	Silver flowering 3	34.917
	CRR073315	Gold flowering 1	19.201
	CRR073316	Gold flowering 2	18.671
	CRR073317	Gold flowering 3	19.703
	CRR073318	Tawny withering 1	17.568
	CRR073319	Tawny withering 2	14.769
	CRR073320	Tawny withering 3	11.646