Gene detail

Detail information of GWHGAAZE004709

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009593450.1	PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q6R2K3\|SRF3_ARATH	Protein STRUBBELIG-RECEPTOR FAMILY 3 (Precursor)
trEMBL	tr\|M1C1M1\|M1C1M1_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400057768}
TAIR10	AT4G03390.1	STRUBBELIG-receptor family 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	121068213	121073511	+
GWHAAZE00000001	mRNA	121068213	121073511	+
GWHAAZE00000001	exon	121068213	121068697	+
GWHAAZE00000001	exon	121068896	121069025	+
GWHAAZE00000001	exon	121069109	121069180	+
GWHAAZE00000001	exon	121069778	121069849	+
GWHAAZE00000001	exon	121069947	121070018	+
GWHAAZE00000001	exon	121070095	121070166	+
GWHAAZE00000001	exon	121070245	121070310	+
GWHAAZE00000001	exon	121070415	121070480	+
GWHAAZE00000001	exon	121070756	121071135	+
GWHAAZE00000001	exon	121071210	121071589	+
GWHAAZE00000001	exon	121071973	121072244	+
GWHAAZE00000001	exon	121072542	121072680	+
GWHAAZE00000001	exon	121072849	121072970	+
GWHAAZE00000001	exon	121073106	121073262	+
GWHAAZE00000001	exon	121073437	121073511	+
GWHAAZE00000001	five_prime_UTR	121068213	121068594	+
GWHAAZE00000001	CDS	121068595	121068697	+
GWHAAZE00000001	CDS	121068896	121069025	+
GWHAAZE00000001	CDS	121069109	121069180	+
GWHAAZE00000001	CDS	121069778	121069849	+
GWHAAZE00000001	CDS	121069947	121070018	+
GWHAAZE00000001	CDS	121070095	121070166	+
GWHAAZE00000001	CDS	121070245	121070310	+
GWHAAZE00000001	CDS	121070415	121070480	+
GWHAAZE00000001	CDS	121070756	121071135	+
GWHAAZE00000001	CDS	121071210	121071589	+
GWHAAZE00000001	CDS	121071973	121072244	+
GWHAAZE00000001	CDS	121072542	121072680	+
GWHAAZE00000001	CDS	121072849	121072970	+
GWHAAZE00000001	CDS	121073106	121073262	+
GWHAAZE00000001	CDS	121073437	121073511	+

Transcript Sequence
>GWHTAAZE004715 TTCTTCTTCTTACTTTTTTTTTTTTTTTAACAAATTTCACTACATACGATCTCTGTATCTCTATGTACACCTGTTTATTACTTTTGCTTTGATTGTAATTGTTAATTTTCTTGATAAATTTAGAGTGAACTTTTCAACAATTCATCTTCATTTTCTTAGTTGTGATCCAATTTGTAATATTTTGTTTTGCTCATTAAACCCATGAAACTTGCTTCTTGAAGTATTGGGTTTTGTAGTTTGTATTTAATTTTGTTGCCACTTGCATTTGAATTCAGATTTAGTGGTCCTGATGTAGGTTTAGTGAGAAAAGTTCTTCAGTAAAGAATAGAGTCAGAGAGGGAAAAAGATACAACAACTTTGAGTTCTGGTGCGCTCAAAATCAATGATGGGGTATTTGAATCCGCTTGTAAACTTGTGGGTTTTGATTGTATTGATGGCAATTTCTTCCCCACCAATTTGCCTGGGATTTACAGACCCTCGCGACGTGTCTGCAGTTAACAGTTTATACGTTGCTCTGGGCTCCCCTCCACTTATTGGGTGGATTCCGAACGGAGGAGATCCGTGTACCGAAGGTTGGCAAGGTGTACTGTGTGTCAATGCCAACATAACTGGAATAGTTCTAAATGGTGTGAATTTGGGGGGCTCATTGGGTGAGAATTTAGGTCTCTTTCCTTCTATCATACAAATTTATCTATCGGGTAACCAGTTAACAGGACCCATCCCAGTGACTCTGTCCTCATTAGGTCAATTGACAGACTTGTCATTGAACAACAATCATTTGATTGGAGTAGTGCCAGATGCCTTTCAACAGTTTACTGGTTTAGTTAATTTGGATTTGTCTGGTAATGGTTTGAGTGGTCAACTGCCTCCTTCAATGGGGAACTTGTTATCTCTTAACACCCTGCACTTGCAGGACAATCTTCTCACCGGGACTCTTGATATTCTGCAGGATCTTCCCCTAAGAGACTTGAACATTGAGAATAATCTGTTCTCTGGACCTATACCCCCAAAGTTGCTGGGTATTCCCAATTTCAGAAGAGCCGGCAATCCCTTTAACACTACTGTTATCCCATCACCACCGGCTTCACCTCCTTCACTCTCTCCGTTTGGGGCTCCCCCTCCTCAAGTAGTACCCGGAAAACAACCAATTGGACCTTCTACTCCATCGATAGCAATTACCTCTTCAAGAGGACAAAAGTTTATGACAACTAAAAGGCTCATGTGGTTTTCTATAGCAGGCCTTTTAATATTTATAGCACTTGCTCTGGCACTTTGGCTGTTTATGTCAAAATGCTGCAAAAGAAAACCTGAAACCAACAAAATTGCCAAGATGCAATTGGGTGCATTTAATACCCCCAAAGAGAACCCTAGTCATAACGAGCCTTTGGTAAAACCTCGTAATCATTTGGAGACAGTTCCTAGAGAGGCAGTTGTAAGGCCACTGGTTGGAGGTGGGAATTTCCATAGGAGAAATAAGTCGATTTCAAAGACAGAGACTGAACTTGAAAAAGACTTTAAGAGAACCATTACGGTTTCCAAAAATGAGGACCATGAGATAGATATGACAGGATTTGATTTAAATTTTCAACCGCCACCACCTCCTATTTTTCCTACTGAAAGGGTAATTGCAAAACCAGTTGTGCCCACGAAGAGACATATTACAGGAGATGTGAATTCTGCTAGTTCCTTCACCATTGCGTCTCTTCAACAGTATACAAACAGCTTTTCTCAAGAAAATCTTATTGGGGAAGGCATGCTGGGCACAATTTATAGAGCTGAGCTTCCTAATGGAAAAGTACTGGCTGTCAAGAAACTGGACCTTGCAGCTTCCAGGAAGCAGACCGAAGAAGATTTTCTTGAGCTTGTGTTTAATCTCTCTAAAATTCGGCACACAAATATAGTTGAATTTGTGGGATACTGTGCCGAACATGGACAACGGCTACTTGTATATCAGTATTGCAGAAACGGCACACTTGATGAAGCACTGCACTTAGAAGATGAGATCCACAAGAAACTTTCATGGAATGCTCGCATACGCTTGGCACTTCAAGCTGCAAAGGCCCTAGAGTATTTGCATGAAGTTTGTCAACCACCGGTTGTGCATAAGAACTTCAAGTCTGCCAATATTCTTCTTGATGAAGAGCTTACAGTACGTGTCTCTGATTGCGGTTTGGCTCCTTTGATATCATCTAACTACATAACTCAGCTACAAGGTTACGGTTATGGTGGCCCAGAACTCGAGTTAGGAAGTTACACATACCAGAGCGATGTTTACAGCTTTGGAGTTGTTATGTTGGAACTTATCACAGGGCGGAAATCTTATGACCGGTCACGGCCTCGAGGGGAGCAATTTCTGGTTAGATGGGCAATTCCTCAGCTTCACGATATAGACGCATTATCAAGGATGGTTGATCCTACTCTACATGGAACATACCCATCAAAGTCTTTGTCCCGATTTGCTGATATAATTTCCTCGTGTCTTCAGGCGGAGCCGGAATTCAGGCCGCCGATGTCTGAAATTGTTCAGAACCTCTTACATATGGTCCAGAGGGAACCCTGA

Network for GWHGAAZE004709

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	102	157	1.90E-08
PF07714.18	PK_Tyr_Ser-Thr	451	717	8.20E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.554
	SRR3591706	second leaf	9.648
	SRR3591707	mature leaf	3.529
	SRR3591708	Shoot apex	30.148
	SRR3591709	Stem	23.800
	SRR3591710	White floral bud	19.211
	SRR3591711	White flower	18.669
	SRR3591712	Green floral bud	17.987
	SRR3591713	Yellow flower	14.003
SRP173429	SRR8316895	Juvenile bud stage	13.416
	SRR8316896	Juvenile bud stage	19.658
	SRR8316897	Juvenile bud stage	10.765
	SRR8316894	Third green stage	8.873
	SRR8316900	Third green stage	15.111
	SRR8316901	Third green stage	14.092
	SRR8316898	Complete white stage	6.637
	SRR8316899	Complete white stage	18.778
	SRR8316903	Complete white stage	14.121
	SRR8316902	Silver flowering stage	7.531
	SRR8316904	Silver flowering stage	11.833
	SRR8316905	Silver flowering stage	5.060
	SRR8316906	Gold flowering stage	16.947
	SRR8316907	Gold flowering stage	17.399
	SRR8316908	Gold flowering stage	16.262
SRP132670	SRR6706286	Control	15.057
	SRR6706287	Light intensity 50%	16.081
	SRR6706288	Light intensity 20%	15.934
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.086
	CNS0095593	Slightly white alabastrum(diploid) 2	12.368
	CNS0095594	Slightly white alabastrum(diploid) 3	12.505
	CNS0095595	Whole white alabastrum(diploid) 2	9.662
	CNS0095596	Whole white alabastrum(diploid) 3	7.068
	CNS0095597	Whole white alabastrum(diploid) 4	9.205
	CNS0095598	Silvery flower (diploied) 1	14.702
	CNS0095599	Silvery flower (diploied) 2	9.547
	CNS0095600	Silvery flower (diploied) 3	12.157
	CNS0095601	Golden flower (diploid) 1	9.089
	CNS0095602	Golden flower (diploid) 2	12.633
	CNS0095603	Golden flower (diploid) 3	12.728
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.442
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.360
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.465
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.716
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.237
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.617
	CNS0095610	Silvery flower (tetraploid) 1	12.837
	CNS0095611	Silvery flower (tetraploid) 2	11.392
	CNS0095612	Silvery flower (tetraploid) 3	15.005
	CNS0095613	Golden flower (tetraploid) 1	7.970
	CNS0095614	Golden flower (tetraploid) 2	11.130
	CNS0095615	Golden flower (tetraploid) 3	21.584
CRA001975	CRR073297	Stem 1	17.218
	CRR073298	Stem 2	15.563
	CRR073299	Stem 3	10.929
	CRR073300	Leaf 1	15.161
	CRR073301	Leaf 2	14.617
	CRR073302	Leaf 3	7.307
	CRR073303	Juvenile bud 1	7.151
	CRR073304	Juvenile bud 2	6.709
	CRR073305	Juvenile bud 3	11.672
	CRR073306	Third green 1	3.818
	CRR073307	Third green 2	4.187
	CRR073308	Third green 3	5.595
	CRR073309	Second white 1	5.970
	CRR073310	Second white 2	4.815
	CRR073311	Second white 3	7.015
	CRR073312	Silver flowering 1	5.356
	CRR073313	Silver flowering 2	6.423
	CRR073314	Silver flowering 3	5.443
	CRR073315	Gold flowering 1	1.301
	CRR073316	Gold flowering 2	2.723
	CRR073317	Gold flowering 3	1.731
	CRR073318	Tawny withering 1	16.831
	CRR073319	Tawny withering 2	17.703
	CRR073320	Tawny withering 3	24.164