Gene detail

Detail information of GWHGAAZE004699

Functional Annotation

Database	Orthologs	Annotation
Nr	CDO99592.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|P43309\|PPO_MALDO	Polyphenol oxidase, chloroplastic (Precursor)
trEMBL	tr\|A0A068TU86\|A0A068TU86_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDO99592.1}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	120928360	120929937	+
GWHAAZE00000001	mRNA	120928360	120929937	+
GWHAAZE00000001	exon	120928360	120929473	+
GWHAAZE00000001	exon	120929519	120929937	+
GWHAAZE00000001	CDS	120928360	120929473	+
GWHAAZE00000001	CDS	120929519	120929937	+

Transcript Sequence
>GWHTAAZE004705 ATGCTTATTGGCTTAGGTGGCCTCTATGGCGCAGCCACTACCCTCGGGTCTGACCCGTTTGCCTTGGCAGCTCCTCTGATGGCACCAGAACTTACAAAATGTGGGGCCGCAGATTTACCTGACGGTGCGGCCCCAACAAACTGCTGCCCTCCTGCATCGACCTCCCAAATCTTGGATTTCTTACTTCCACCTCCATCAAGTACCATGCGTGTTAGACCCGCTGCTCATTTGGTCGACCAAGCGTATATAGACAAGTATTATAGAGCGATCAATCTCATGAAGGCACTTCCCGATGATGATCCTCGTAGTTTCAAGCAACAAGCTAGTATCCATTGCGCTTACTGTAATGGTTCTTATGACCAAGTTGGGTTCCCGAATCTCGACCTTCAAGTTCACAACTCCTGGCTCTTTTATCCTTTCCATAGACATTATTTGTACTTCTTTGAACGAATCTTAGGGAAGTTGATTGATGACCCAACTTTCGCTATGCCGTTCTGGAACTGGGATTCCCCAGGCGGTATGCGTATCCCAACCATATATGCAGACCGAAACTCTCCTCTTTATGATAGGAACCGCGATGCAAGGCACCAGCCACCGACAATGCTGGACCTGGATTATAACGGTAGTGATGCACCTTTAAGTGATAGCCAACAACTATCACAAAATCTTACTATCATGTATAGGCAAATGGTGTCGAGTTCAAGAACGGCTCGGCTTTTCCTTGGAAGTCCTTATCGAGCCGGGGACGACCCAAACCCTGGAGGTGGGTCTGTCGAGAGCATTCCTCACGGTTCGGTCCACATCTGGTCCGGTGACAGAAACCAGCCTAATAATGAGAACATGGGGAACTTCTACTCTGCTGCACGTGACCCTATATTCTATGCTCACCACTCCAACATTGACCGGATGTGGACCATTTGGAAGACTCTAGGAGGGAGAAGGCAGGACTTCACCGACACCGACTGGCTGGACACCTCTTTCGTGTTCTACGATGAAAATGCTCAACTCGTGCGCGTGAAGGTTCGCGATGGTTTGGACAGTTCGAGAATGGGGTATGTTTACCAAGACGTGGATACTCCATGGCTGAACAGCCGACCCACACCGCGAGTAACTACCGATTTTGGTATGGCTAACGATGTTTTTCCTAGGAGACTGGATAGGGTGGTGAAAGTGATGGTGCCTAGGCCTAAAAAGGCAAGGAGCGCCAAGGAGAAAGAGGAAGAAGAGGAGATATTGGTGACAGAAGGGATTGAGGTTGGGAGAGACGAGTTTGTGAAGTTCGATGTATTTATTAATGACGAGGACGAGGTGACGAGTGGGCCAGACAAGACGGAGTTCGCGGGGAGCTTTGTGAATGTGCCGCATAAGCATAAGCATGATAGTAAAACTAAGACGAGGTTGAAACTAGGGTTGACGGAGTTGTTGGAGGATTTGGGAGCTGAAGATGATGATAATGTGTTGGTTACTTTGGTGCCAAAAATTGGGTGTGGTGGTGTCACCATTGATGCTATCAAGATTGTGCTTGAGGATTAA

Network for GWHGAAZE004699

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00264.21	Tyrosinase	101	309	1.90E-37
PF12142.9	PPO1_DWL	316	367	5.90E-26
PF12143.9	PPO1_KFDV	381	507	3.60E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00422	E1.10.3.1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tyrosine metabolism	map00350
		Isoquinoline alkaloid biosynthesis	map00950

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0004097	molecular_function	catechol oxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.749
SRP173429	SRR8316895	Juvenile bud stage	0.002
	SRR8316896	Juvenile bud stage	0.043
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.051
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.325
	SRR8316902	Silver flowering stage	0.047
	SRR8316904	Silver flowering stage	0.042
	SRR8316905	Silver flowering stage	0.163
	SRR8316906	Gold flowering stage	5.208
	SRR8316907	Gold flowering stage	4.169
	SRR8316908	Gold flowering stage	8.246
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.032
	CNS0095597	Whole white alabastrum(diploid) 4	0.002
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.054
	CNS0095602	Golden flower (diploid) 2	0.139
	CNS0095603	Golden flower (diploid) 3	0.173
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.083
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.015
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.029
	CNS0095613	Golden flower (tetraploid) 1	7.467
	CNS0095614	Golden flower (tetraploid) 2	1.638
	CNS0095615	Golden flower (tetraploid) 3	0.206
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.020
	CRR073299	Stem 3	0.011
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.330
	CRR073310	Second white 2	0.996
	CRR073311	Second white 3	0.826
	CRR073312	Silver flowering 1	26.529
	CRR073313	Silver flowering 2	11.480
	CRR073314	Silver flowering 3	14.322
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000