Gene detail

Detail information of GWHGAAZE004689

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP20943.1	9.73212E-87	hypothetical protein JCGZ_21414 [Jatropha curcas]
Swissprot	tr\|C0LGH3\|Y5614_ARATH	4E-44	Probable LRR receptor-like serine/threonine-protein kinase At1g56140 (Precursor)
trEMBL	tr\|A0A067JDV2\|A0A067JDV2_JATCU	4E-87	Uncharacterized protein {ECO:0000313\|EMBL:KDP20943.1}
TAIR10	AT1G56140.1	5E-33	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	120780306	120782225	+
GWHAAZE00000001	mRNA	120780306	120782225	+
GWHAAZE00000001	exon	120780306	120780516	+
GWHAAZE00000001	exon	120781211	120781401	+
GWHAAZE00000001	exon	120781914	120782225	+
GWHAAZE00000001	CDS	120780306	120780516	+
GWHAAZE00000001	CDS	120781211	120781401	+
GWHAAZE00000001	CDS	120781914	120782225	+

Transcript Sequence
>GWHTAAZE004695 GGAGTTCTAAAAACTGGAAGACATGTAGCTGTGAAGGCACTTTCTGCAGAATCAACGCAAGGGGTGCGTGAATTTTTAACGGAGATTGATACCATATCAAATGTTAGGCATCCAAACCTTGTCGAGTTGATTGGATGCTGTGTAGAAGGAGCTAACCGGATTTTGGTCTACGAGTATTTAGAAAATAACAGCCTTGATGCTGCACTGCTAGGAACATATTCCGACTTATATATTGGGCTTTGTTCCACCAGTGGTTATTTGGCACCTGAATATGTATTGGGTGGTCAGTTAACACTGAAGGCTGACGTTTACAGCTTTGGGGTCCTTGTACTTGAAGTAATTAGTGGCAGAAGCAGTGCAAGGGCAAACTGGGGAGGGATGCAGAAACTCCTCTTGGAATGGACATGGGAGCTATACGAAGAAGGGAAGTTGTTGGAGCTAGTGGACCCTGAACTGCAAGAATTCCCTCAAGAAGAAGTGATGAGGTACATGAAAGTGGCCTTGTTCTGTACCCAAGCAACTGCAAGCCGGCGGCCAATCATGAGCCAAGTCGTTGACATGCTCTCAAGAGACATTCGTCTTAATGAGAAGCAAATTACGGCCCCTGGTTTCTTTCCAGATTCCGATGATAAAAAATTATCCGGGGATACAGGTAGTAGTAGCTATCAGATGAGCTCTTTCCCCGTCACTATAACTCAAGTCACCCCTAGATGA

Network for GWHGAAZE004689

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	5	69	2.40E-11
PF07714.18	PK_Tyr_Ser-Thr	86	188	2.70E-07

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.390
	SRR3591706	second leaf	6.901
	SRR3591707	mature leaf	9.912
	SRR3591708	Shoot apex	8.838
	SRR3591709	Stem	13.542
	SRR3591710	White floral bud	15.279
	SRR3591711	White flower	16.388
	SRR3591712	Green floral bud	10.508
	SRR3591713	Yellow flower	20.085
SRP173429	SRR8316895	Juvenile bud stage	6.769
	SRR8316896	Juvenile bud stage	9.545
	SRR8316897	Juvenile bud stage	2.971
	SRR8316894	Third green stage	4.628
	SRR8316900	Third green stage	12.790
	SRR8316901	Third green stage	12.075
	SRR8316898	Complete white stage	9.119
	SRR8316899	Complete white stage	18.351
	SRR8316903	Complete white stage	12.642
	SRR8316902	Silver flowering stage	10.566
	SRR8316904	Silver flowering stage	13.333
	SRR8316905	Silver flowering stage	5.860
	SRR8316906	Gold flowering stage	30.894
	SRR8316907	Gold flowering stage	31.202
	SRR8316908	Gold flowering stage	30.867
SRP132670	SRR6706286	Control	15.333
	SRR6706287	Light intensity 50%	16.225
	SRR6706288	Light intensity 20%	16.740
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.058
	CNS0095593	Slightly white alabastrum(diploid) 2	12.394
	CNS0095594	Slightly white alabastrum(diploid) 3	11.444
	CNS0095595	Whole white alabastrum(diploid) 2	6.201
	CNS0095596	Whole white alabastrum(diploid) 3	8.982
	CNS0095597	Whole white alabastrum(diploid) 4	8.027
	CNS0095598	Silvery flower (diploied) 1	11.268
	CNS0095599	Silvery flower (diploied) 2	10.062
	CNS0095600	Silvery flower (diploied) 3	17.550
	CNS0095601	Golden flower (diploid) 1	9.378
	CNS0095602	Golden flower (diploid) 2	17.093
	CNS0095603	Golden flower (diploid) 3	14.931
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.497
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.232
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.737
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.719
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.178
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.924
	CNS0095610	Silvery flower (tetraploid) 1	19.153
	CNS0095611	Silvery flower (tetraploid) 2	12.577
	CNS0095612	Silvery flower (tetraploid) 3	19.366
	CNS0095613	Golden flower (tetraploid) 1	15.464
	CNS0095614	Golden flower (tetraploid) 2	15.725
	CNS0095615	Golden flower (tetraploid) 3	15.684
CRA001975	CRR073297	Stem 1	15.271
	CRR073298	Stem 2	9.915
	CRR073299	Stem 3	9.966
	CRR073300	Leaf 1	11.256
	CRR073301	Leaf 2	13.473
	CRR073302	Leaf 3	7.649
	CRR073303	Juvenile bud 1	10.288
	CRR073304	Juvenile bud 2	7.316
	CRR073305	Juvenile bud 3	13.303
	CRR073306	Third green 1	18.962
	CRR073307	Third green 2	19.269
	CRR073308	Third green 3	18.677
	CRR073309	Second white 1	17.727
	CRR073310	Second white 2	19.191
	CRR073311	Second white 3	17.028
	CRR073312	Silver flowering 1	17.716
	CRR073313	Silver flowering 2	15.411
	CRR073314	Silver flowering 3	9.645
	CRR073315	Gold flowering 1	6.656
	CRR073316	Gold flowering 2	7.574
	CRR073317	Gold flowering 3	4.148
	CRR073318	Tawny withering 1	19.243
	CRR073319	Tawny withering 2	17.638
	CRR073320	Tawny withering 3	18.934