Detail information of GWHGAAZE004673


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002519062.11.1573E-152phosphoglycerate mutase, putative [Ricinus communis]
Swissprottr|Q9FNJ9|CA1P_ARATH7E-55Probable 2-carboxy-D-arabinitol-1-phosphatase {ECO:0000305} (Precursor)
trEMBLtr|B9RZ93|B9RZ93_RICCO4E-153Phosphoglycerate mutase, putative {ECO:0000313|EMBL:EEF43273.1}
TAIR10AT5G22620.21E-47phosphoglycerate/bisphosphoglycerate mutase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene120611396120613920-
GWHAAZE00000001mRNA120611396120613920-
GWHAAZE00000001exon120611396120611534-
GWHAAZE00000001exon120611675120611754-
GWHAAZE00000001exon120611862120612001-
GWHAAZE00000001exon120612176120612275-
GWHAAZE00000001exon120612404120612523-
GWHAAZE00000001exon120613383120613578-
GWHAAZE00000001exon120613913120613920-
GWHAAZE00000001CDS120613913120613920-
GWHAAZE00000001CDS120613383120613578-
GWHAAZE00000001CDS120612404120612523-
GWHAAZE00000001CDS120612176120612275-
GWHAAZE00000001CDS120611862120612001-
GWHAAZE00000001CDS120611675120611754-
GWHAAZE00000001CDS120611396120611534-
Transcript Sequence

Network for GWHGAAZE004673

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00300.23His_Phos_1522391.00E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15637PGAM5 TNF signaling pathway map04668
Mitophagy - animalmap04137
Necroptosismap04217

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.021
SRR3591706second leaf50.563
SRR3591707mature leaf70.323
SRR3591708Shoot apex27.072
SRR3591709Stem14.705
SRR3591710White floral bud5.924
SRR3591711White flower4.422
SRR3591712Green floral bud7.873
SRR3591713Yellow flower1.350
SRP173429 SRR8316895Juvenile bud stage 9.308
SRR8316896Juvenile bud stage 11.482
SRR8316897Juvenile bud stage 12.853
SRR8316894Third green stage 5.369
SRR8316900Third green stage 10.635
SRR8316901Third green stage 9.284
SRR8316898Complete white stage 2.404
SRR8316899Complete white stage 12.218
SRR8316903Complete white stage 3.168
SRR8316902Silver flowering stage1.506
SRR8316904Silver flowering stage0.605
SRR8316905Silver flowering stage0.529
SRR8316906Gold flowering stage 1.439
SRR8316907Gold flowering stage 0.940
SRR8316908Gold flowering stage 2.007
SRP132670SRR6706286Control12.697
SRR6706287Light intensity 50%13.602
SRR6706288Light intensity 20%14.110
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.497
CNS0095593Slightly white alabastrum(diploid) 210.364
CNS0095594Slightly white alabastrum(diploid) 38.963
CNS0095595Whole white alabastrum(diploid) 27.741
CNS0095596Whole white alabastrum(diploid) 35.323
CNS0095597Whole white alabastrum(diploid) 46.290
CNS0095598Silvery flower (diploied) 115.792
CNS0095599Silvery flower (diploied) 210.125
CNS0095600Silvery flower (diploied) 35.176
CNS0095601Golden flower (diploid) 116.069
CNS0095602Golden flower (diploid) 25.650
CNS0095603Golden flower (diploid) 37.187
CNS0095604Slightly white alabastrum(tetraploid) 113.130
CNS0095605Slightly white alabastrum(tetraploid) 213.854
CNS0095606Slightly white alabastrum(tetraploid) 319.992
CNS0095607Whole white alabastrum(tetraploid) 16.596
CNS0095608Whole white alabastrum(tetraploid) 26.953
CNS0095609Whole white alabastrum(tetraploid) 316.182
CNS0095610Silvery flower (tetraploid) 15.445
CNS0095611Silvery flower (tetraploid) 27.485
CNS0095612Silvery flower (tetraploid) 35.020
CNS0095613Golden flower (tetraploid) 13.969
CNS0095614Golden flower (tetraploid) 24.303
CNS0095615Golden flower (tetraploid) 30.254
CRA001975CRR073297Stem 118.361
CRR073298Stem 212.727
CRR073299Stem 39.575
CRR073300Leaf 112.636
CRR073301Leaf 211.073
CRR073302Leaf 38.931
CRR073303Juvenile bud 17.022
CRR073304Juvenile bud 26.142
CRR073305Juvenile bud 36.597
CRR073306Third green 10.789
CRR073307Third green 21.190
CRR073308Third green 30.825
CRR073309Second white 10.653
CRR073310Second white 20.136
CRR073311Second white 30.273
CRR073312Silver flowering 10.063
CRR073313Silver flowering 20.501
CRR073314Silver flowering 30.051
CRR073315Gold flowering 157.063
CRR073316Gold flowering 270.204
CRR073317Gold flowering 347.301
CRR073318Tawny withering 110.927
CRR073319Tawny withering 211.454
CRR073320Tawny withering 37.265