Detail information of GWHGAAZE004662


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAC09580.10protein kinase (PK), partial [Fagus sylvatica]
Swissprottr|Q2MHE4|HT1_ARATH7E-98Serine/threonine-protein kinase HT1
trEMBLtr|Q9FDV7|Q9FDV7_FAGSY0Protein kinase (PK) {ECO:0000313|EMBL:CAC09580.1} (Fragment)
TAIR10AT5G58950.18E-162Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene120444610120447355-
GWHAAZE00000001mRNA120444610120447355-
GWHAAZE00000001exon120444610120444885-
GWHAAZE00000001exon120445515120445952-
GWHAAZE00000001exon120446615120447355-
GWHAAZE00000001CDS120446615120447355-
GWHAAZE00000001CDS120445515120445952-
GWHAAZE00000001CDS120444610120444885-
Transcript Sequence

Network for GWHGAAZE004662

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07714.18PK_Tyr_Ser-Thr1884322.10E-50
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyTKL-Pl-4

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.295
SRR3591706second leaf36.383
SRR3591707mature leaf69.353
SRR3591708Shoot apex28.672
SRR3591709Stem70.427
SRR3591710White floral bud113.004
SRR3591711White flower75.473
SRR3591712Green floral bud75.457
SRR3591713Yellow flower65.259
SRP173429 SRR8316895Juvenile bud stage 24.239
SRR8316896Juvenile bud stage 41.878
SRR8316897Juvenile bud stage 17.273
SRR8316894Third green stage 12.934
SRR8316900Third green stage 47.130
SRR8316901Third green stage 47.333
SRR8316898Complete white stage 24.649
SRR8316899Complete white stage 49.063
SRR8316903Complete white stage 36.420
SRR8316902Silver flowering stage26.508
SRR8316904Silver flowering stage32.041
SRR8316905Silver flowering stage17.260
SRR8316906Gold flowering stage 60.600
SRR8316907Gold flowering stage 49.441
SRR8316908Gold flowering stage 48.752
SRP132670SRR6706286Control35.674
SRR6706287Light intensity 50%31.931
SRR6706288Light intensity 20%31.683
CNP0000432CNS0095592Slightly white alabastrum(diploid) 148.640
CNS0095593Slightly white alabastrum(diploid) 241.385
CNS0095594Slightly white alabastrum(diploid) 352.501
CNS0095595Whole white alabastrum(diploid) 270.468
CNS0095596Whole white alabastrum(diploid) 374.988
CNS0095597Whole white alabastrum(diploid) 488.671
CNS0095598Silvery flower (diploied) 148.301
CNS0095599Silvery flower (diploied) 246.624
CNS0095600Silvery flower (diploied) 369.236
CNS0095601Golden flower (diploid) 136.203
CNS0095602Golden flower (diploid) 263.772
CNS0095603Golden flower (diploid) 364.003
CNS0095604Slightly white alabastrum(tetraploid) 145.597
CNS0095605Slightly white alabastrum(tetraploid) 249.466
CNS0095606Slightly white alabastrum(tetraploid) 322.850
CNS0095607Whole white alabastrum(tetraploid) 172.715
CNS0095608Whole white alabastrum(tetraploid) 282.992
CNS0095609Whole white alabastrum(tetraploid) 339.804
CNS0095610Silvery flower (tetraploid) 145.054
CNS0095611Silvery flower (tetraploid) 256.646
CNS0095612Silvery flower (tetraploid) 362.741
CNS0095613Golden flower (tetraploid) 144.839
CNS0095614Golden flower (tetraploid) 234.517
CNS0095615Golden flower (tetraploid) 3119.729
CRA001975CRR073297Stem 146.820
CRR073298Stem 244.851
CRR073299Stem 339.436
CRR073300Leaf 152.525
CRR073301Leaf 244.021
CRR073302Leaf 331.476
CRR073303Juvenile bud 150.930
CRR073304Juvenile bud 239.616
CRR073305Juvenile bud 337.081
CRR073306Third green 137.874
CRR073307Third green 245.230
CRR073308Third green 339.222
CRR073309Second white 135.366
CRR073310Second white 230.245
CRR073311Second white 335.679
CRR073312Silver flowering 146.180
CRR073313Silver flowering 246.626
CRR073314Silver flowering 339.472
CRR073315Gold flowering 181.599
CRR073316Gold flowering 273.269
CRR073317Gold flowering 367.147
CRR073318Tawny withering 158.196
CRR073319Tawny withering 254.298
CRR073320Tawny withering 353.275