Gene detail

Detail information of GWHGAAZE004657

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGT56425.1	1.07071E-61	leafy cotyledon 2 [Ricinus communis]
Swissprot	tr\|Q1PFR7\|LEC2_ARATH	1E-45	B3 domain-containing transcription factor LEC2
trEMBL	tr\|V9P4F9\|V9P4F9_RICCO	4E-62	Leafy cotyledon 2 {ECO:0000313\|EMBL:AGT56425.1}
TAIR10	AT1G28300.1	1E-40	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	120336920	120341572	+
GWHAAZE00000001	mRNA	120336920	120341572	+
GWHAAZE00000001	exon	120336920	120336969	+
GWHAAZE00000001	exon	120338538	120338621	+
GWHAAZE00000001	exon	120339212	120340001	+
GWHAAZE00000001	exon	120340098	120340172	+
GWHAAZE00000001	exon	120340548	120340648	+
GWHAAZE00000001	exon	120340771	120340817	+
GWHAAZE00000001	exon	120340954	120341027	+
GWHAAZE00000001	exon	120341221	120341572	+
GWHAAZE00000001	CDS	120336920	120336969	+
GWHAAZE00000001	CDS	120338538	120338621	+
GWHAAZE00000001	CDS	120339212	120340001	+
GWHAAZE00000001	CDS	120340098	120340172	+
GWHAAZE00000001	CDS	120340548	120340648	+
GWHAAZE00000001	CDS	120340771	120340817	+
GWHAAZE00000001	CDS	120340954	120341027	+
GWHAAZE00000001	CDS	120341221	120341445	+
GWHAAZE00000001	three_prime_UTR	120341446	120341572	+

Transcript Sequence
>GWHTAAZE004663 ATGGTTGAGAAGCCAGATTTGGAGACAGGTCTACGGAGTCCGCATTCCAGGGCAGCAACTTACATGTGTACTCTTGCTGCTCAGATGGTCAGACTTGCCTCACTTTTTGTCCCTGCCAGCTCAGACATGACAAGGGCAGCAACTTACACGTGTACTCTTGCCACGGTTTCTGTCCCTGCCAGCTCTGATAATTTCTGCACACATGTTTCTTGCCATTCCTACACCTCTGTCATTCATCAGTTGCATCCTTCTCCCAGAGCCCTATATCTACCCATTGCCTCTTCTCAACTGCATCACAAAACCCAGCCTCCTAAACCATCTCTGATACAACTCGCAGATTTCATTTTGATGGAGAATCTTACTCTGCCGCCTACCACAGTCACTACCAACATCACCACCACCTTGTACAACAACCAAGAACAAACCTCAACGAACACCACCTTGTACAACCAGGAAGAAACCTTAACCTTAGGAAACCAAGAGAGACCCAACATGATTAATGAAGCATATAACTATGTCCCTTCTTTTGCAATGCCTCACTCTAAATTTCACAATACATCACCTTACCTACAGTCTAATAATCAGAACATGCAATTCCCTTATAGCCACTTATATTGGCGTGCTGTTCCAGCAGTTTTCCCCGGGTATCCGTATCAAGTTGAGGAAAGTGGAACAGTAAACGAAACACCCAATTCATTCCCTGATAGGCTTCTATCAAATGGAAATGTAGGACATACGGTCCAAAGGACAATCTCCATACCACCAGCAGGGTTATCAGAGTTTCAGAAACCAAGAAGATCAAAACCTTCAACTACCAACTCTTCAAGATCCAAGACTAAGCAAAAGATGGGTAAATGCGCTGCTTCTAGTTATGGCAGCAATGGCGACCAGGACCTCTACACTATCAGTACTCCAGATAACAGGAAACTGAGGGTCTTGCTGCAAAAGGACTTATCAAGCAGTGATGTTGGGACTGTTGGAAGGATTGTTCTCCCAAAGAGGGAGGCTGAGAGAAATCTACCAAGCTTCTCTGATAAAGAAGGCATCCAATTGGTAATGAGAGATGTATGCTCTACTCGACAGTGGCAAATGAGATATAGGTTCTGGTCAAACCACAAGGGTAGGATGTATCTTCTCGATCAAATAGGTGATTTCGTGGGGCAAAATGGACTGGAGATTGGAGATTGTCTTACTATTTACGAGGATGAAAGCAAGAATCTTTATTTCTCCATCAGGAAGGCAGAAAAACCAGCACAGCAACCCTTAAACGAGCCAAGGAACGCGTGTTATAGCTATGGTAGTATACCATTCACCGAGGGAGCAACAGACGAGGACACATTGTCTTTGCAAATACTTACAGAAGAACTAAAACATACAGATCAAGAAAATAACAGCCTTACAACTTTGATACAGACACTGCTTCATCAACCCAACAACCAACAATAGTAGTTACCAGAGAAAGGTGCCTCTAACCAACAATTGAGGCAATTGAAGTCTCGCCATTACTAGCAAACACAAGAACAAAGATACATGATCTCGTCCTATGAATCGTCACTTGGCATATTGACAATGC

Network for GWHGAAZE004657

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	315	414	6.20E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.060
	SRR3591706	second leaf	4.714
	SRR3591707	mature leaf	5.910
	SRR3591708	Shoot apex	7.902
	SRR3591709	Stem	11.084
	SRR3591710	White floral bud	7.661
	SRR3591711	White flower	8.955
	SRR3591712	Green floral bud	6.628
	SRR3591713	Yellow flower	8.356
SRP173429	SRR8316895	Juvenile bud stage	2.769
	SRR8316896	Juvenile bud stage	4.072
	SRR8316897	Juvenile bud stage	2.260
	SRR8316894	Third green stage	2.138
	SRR8316900	Third green stage	5.058
	SRR8316901	Third green stage	3.747
	SRR8316898	Complete white stage	2.008
	SRR8316899	Complete white stage	6.503
	SRR8316903	Complete white stage	4.118
	SRR8316902	Silver flowering stage	1.803
	SRR8316904	Silver flowering stage	3.310
	SRR8316905	Silver flowering stage	1.581
	SRR8316906	Gold flowering stage	5.756
	SRR8316907	Gold flowering stage	5.225
	SRR8316908	Gold flowering stage	3.908
SRP132670	SRR6706286	Control	4.209
	SRR6706287	Light intensity 50%	4.403
	SRR6706288	Light intensity 20%	4.239
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.745
	CNS0095593	Slightly white alabastrum(diploid) 2	5.623
	CNS0095594	Slightly white alabastrum(diploid) 3	2.769
	CNS0095595	Whole white alabastrum(diploid) 2	4.058
	CNS0095596	Whole white alabastrum(diploid) 3	3.013
	CNS0095597	Whole white alabastrum(diploid) 4	3.536
	CNS0095598	Silvery flower (diploied) 1	6.569
	CNS0095599	Silvery flower (diploied) 2	4.538
	CNS0095600	Silvery flower (diploied) 3	4.258
	CNS0095601	Golden flower (diploid) 1	5.864
	CNS0095602	Golden flower (diploid) 2	4.011
	CNS0095603	Golden flower (diploid) 3	3.416
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.065
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.044
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.855
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.224
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.054
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.859
	CNS0095610	Silvery flower (tetraploid) 1	4.026
	CNS0095611	Silvery flower (tetraploid) 2	4.327
	CNS0095612	Silvery flower (tetraploid) 3	2.263
	CNS0095613	Golden flower (tetraploid) 1	5.811
	CNS0095614	Golden flower (tetraploid) 2	4.538
	CNS0095615	Golden flower (tetraploid) 3	6.984
CRA001975	CRR073297	Stem 1	7.256
	CRR073298	Stem 2	6.232
	CRR073299	Stem 3	1.225
	CRR073300	Leaf 1	6.951
	CRR073301	Leaf 2	6.153
	CRR073302	Leaf 3	1.289
	CRR073303	Juvenile bud 1	1.746
	CRR073304	Juvenile bud 2	0.835
	CRR073305	Juvenile bud 3	1.439
	CRR073306	Third green 1	0.027
	CRR073307	Third green 2	0.157
	CRR073308	Third green 3	0.271
	CRR073309	Second white 1	0.050
	CRR073310	Second white 2	0.657
	CRR073311	Second white 3	0.486
	CRR073312	Silver flowering 1	0.158
	CRR073313	Silver flowering 2	0.720
	CRR073314	Silver flowering 3	0.520
	CRR073315	Gold flowering 1	0.388
	CRR073316	Gold flowering 2	1.021
	CRR073317	Gold flowering 3	0.308
	CRR073318	Tawny withering 1	2.666
	CRR073319	Tawny withering 2	1.991
	CRR073320	Tawny withering 3	3.312