Detail information of GWHGAAZE004610


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO96738.12.3757E-129unnamed protein product [Coffea canephora]
Swissprottr|Q8GYB1|NUD15_ARATH6E-119Nudix hydrolase 15, mitochondrial (Precursor)
trEMBLtr|A0A068TN20|A0A068TN20_COFCA9E-130Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO96738.1}
TAIR10AT1G28960.44E-82nudix hydrolase homolog 15

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene119650826119653831-
GWHAAZE00000001mRNA119650826119653831-
GWHAAZE00000001exon119650826119650909-
GWHAAZE00000001exon119651244119651429-
GWHAAZE00000001exon119651517119651636-
GWHAAZE00000001exon119651735119651813-
GWHAAZE00000001exon119651990119652027-
GWHAAZE00000001exon119652869119653011-
GWHAAZE00000001exon119653144119653194-
GWHAAZE00000001exon119653531119653831-
GWHAAZE00000001CDS119653531119653831-
GWHAAZE00000001CDS119653144119653194-
GWHAAZE00000001CDS119652869119653011-
GWHAAZE00000001CDS119651990119652027-
GWHAAZE00000001CDS119651735119651813-
GWHAAZE00000001CDS119651517119651636-
GWHAAZE00000001CDS119651244119651429-
GWHAAZE00000001CDS119650826119650909-
Transcript Sequence

Network for GWHGAAZE004610

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00293.29NUDIX691614.50E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17879NUDT7 Peroxisome map04146

Gene Ontology

GO term OntologyName
GO:0016787molecular_functionhydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.024
SRR3591706second leaf9.058
SRR3591707mature leaf15.943
SRR3591708Shoot apex13.610
SRR3591709Stem24.416
SRR3591710White floral bud40.979
SRR3591711White flower35.980
SRR3591712Green floral bud21.415
SRR3591713Yellow flower40.039
SRP173429 SRR8316895Juvenile bud stage 9.053
SRR8316896Juvenile bud stage 15.334
SRR8316897Juvenile bud stage 4.886
SRR8316894Third green stage 9.435
SRR8316900Third green stage 22.394
SRR8316901Third green stage 23.701
SRR8316898Complete white stage 25.514
SRR8316899Complete white stage 34.962
SRR8316903Complete white stage 34.771
SRR8316902Silver flowering stage25.591
SRR8316904Silver flowering stage34.090
SRR8316905Silver flowering stage23.130
SRR8316906Gold flowering stage 60.536
SRR8316907Gold flowering stage 57.309
SRR8316908Gold flowering stage 57.640
SRP132670SRR6706286Control23.733
SRR6706287Light intensity 50%25.353
SRR6706288Light intensity 20%28.501
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.910
CNS0095593Slightly white alabastrum(diploid) 211.707
CNS0095594Slightly white alabastrum(diploid) 38.886
CNS0095595Whole white alabastrum(diploid) 210.132
CNS0095596Whole white alabastrum(diploid) 310.569
CNS0095597Whole white alabastrum(diploid) 410.116
CNS0095598Silvery flower (diploied) 120.920
CNS0095599Silvery flower (diploied) 216.223
CNS0095600Silvery flower (diploied) 329.832
CNS0095601Golden flower (diploid) 114.811
CNS0095602Golden flower (diploid) 220.848
CNS0095603Golden flower (diploid) 319.492
CNS0095604Slightly white alabastrum(tetraploid) 111.399
CNS0095605Slightly white alabastrum(tetraploid) 28.964
CNS0095606Slightly white alabastrum(tetraploid) 321.339
CNS0095607Whole white alabastrum(tetraploid) 110.266
CNS0095608Whole white alabastrum(tetraploid) 28.309
CNS0095609Whole white alabastrum(tetraploid) 314.294
CNS0095610Silvery flower (tetraploid) 137.300
CNS0095611Silvery flower (tetraploid) 228.483
CNS0095612Silvery flower (tetraploid) 345.729
CNS0095613Golden flower (tetraploid) 122.780
CNS0095614Golden flower (tetraploid) 229.381
CNS0095615Golden flower (tetraploid) 325.945
CRA001975CRR073297Stem 117.813
CRR073298Stem 216.444
CRR073299Stem 311.499
CRR073300Leaf 123.579
CRR073301Leaf 220.647
CRR073302Leaf 321.106
CRR073303Juvenile bud 117.571
CRR073304Juvenile bud 221.595
CRR073305Juvenile bud 320.266
CRR073306Third green 137.500
CRR073307Third green 235.259
CRR073308Third green 336.054
CRR073309Second white 126.429
CRR073310Second white 224.047
CRR073311Second white 320.984
CRR073312Silver flowering 110.343
CRR073313Silver flowering 211.630
CRR073314Silver flowering 310.054
CRR073315Gold flowering 19.054
CRR073316Gold flowering 210.721
CRR073317Gold flowering 35.964
CRR073318Tawny withering 117.799
CRR073319Tawny withering 212.616
CRR073320Tawny withering 313.019