Gene detail

Detail information of GWHGAAZE004609

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011096413.1	0	PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic-like [Sesamum indicum]
Swissprot	tr\|P93162\|CHLI_SOYBN	0	Magnesium-chelatase subunit ChlI, chloroplastic (Precursor)
trEMBL	tr\|B9I1P3\|B9I1P3_POPTR	0	Magnesium-chelatase subunit chlI family protein {ECO:0000313\|EMBL:EEE97450.1}
TAIR10	AT5G45930.1	2E-171	magnesium chelatase i2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	119647839	119649938	+
GWHAAZE00000001	mRNA	119647839	119649938	+
GWHAAZE00000001	exon	119647839	119647941	+
GWHAAZE00000001	exon	119648166	119648272	+
GWHAAZE00000001	exon	119648886	119649938	+
GWHAAZE00000001	CDS	119647839	119647941	+
GWHAAZE00000001	CDS	119648166	119648272	+
GWHAAZE00000001	CDS	119648886	119649938	+

Transcript Sequence
>GWHTAAZE004615 ATGGCTGCAGTACTCGGAACTTCATCTGCAGCACTCTTGGCAAATCGACCTCTTTCTTCACCCTCTTCCAATTCTTCCATTCACTCTCTCTCCTTCACTCCAGGGAGGAAGTTGTATGGAGGGATTGGGGTTCCGCTTAAGAAGGAGAGGTCTAAATTCCGTTTTTCAATTTCCAATGTTGCTACTGAAATCAGCCCTTCCCAACAACAGGCCCAGAAGCTCGCTGCAAAGGAAAGCCAAAGACCCGTATATCCATTTGCTGCTATAGTAGGACAAGACGAGATGAAACTATGCCTTCTTCTAAATGTGATTGACCCCAAGATCGGCGGTGTCATGATTATGGGTGACAGAGGAACAGGGAAATCAACAACCGTCAGGTCATTGGTAGATTTGCTTCCCGAGATAAAAGTGGTTTCTGGTGATCCATTCAACTCCGATCCAGAAGATCCAGAATCTATGGGCATGGAAGTCCGAGAAAAAATCATTAAGGGCGAGGAACTTACTCTTGTCACCACCAAAATTAACATGGTTGATTTGCCATTGGGTGCCACGGAAGATAGGGTCTGTGGTACAATTGACATTGAAAAGGCTCTTACCGAGGGCGTGAAGGCATTTGAGCCTGGCCTTCTTGCTAAAGCCAACAGAGGGATTCTTTATGTTGACGAAGTCAATCTTTTAGATGACCATTTAGTGGATGTCCTCTTGGATTCTGCCGCCTCAGGTTGGAACACTGTTGAAAGAGAGGGAATTTCAATTTCACATCCCGCTCGGTTTATTCTTATAGGCTCGGGGAATCCTGAAGAAGGGGAACTTAGGCCACAATTGCTGGACCGTTTTGGTATGCATGCACAAGTGGGGACCGTAAGGGACGCAGAGCTGAGGGTGAAAATTGTGGAGGAGAGAGCTCGGTTTGATAAAAATCCCAAGGAGTTTAGAGAATCTTACAAGTTAGATCAAGATAAGCTACAAGAACAAATTACCGCAGCTAGAAAATCTCTTTCATCTGTTCATATCGATCATGATCTTCGAGTTAAAATCTCTAAGGTTTGTGCAGAGCTGAATGTTGATGGACTAAGAGGGGACATAGTGTCGAATAGGGCAGCTAAAGCTTTGGCGGCACTAAAGGGAAGGGATAAAGTTACTCCGGAGGATATTGCAACTGTTATCCCCAACTGCTTGAGACACAGGCTTCGGAAGGATCCCTTGGAGTCGATTGACTCGGGCTTACTTGTTATTGAGAAATTCTATGAGGTTTTTACCTGA

Network for GWHGAAZE004609

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01078.22	Mg_chelatase	196	266	2.40E-07
PF17863.2	AAA_lid_2	346	403	2.60E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03405	chlI, bchI	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0015995	biological_process	chlorophyll biosynthetic process
GO:0005524	molecular_function	ATP binding
GO:0016851	molecular_function	magnesium chelatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	74.749
	SRR3591706	second leaf	375.935
	SRR3591707	mature leaf	183.361
	SRR3591708	Shoot apex	152.899
	SRR3591709	Stem	30.894
	SRR3591710	White floral bud	15.482
	SRR3591711	White flower	18.931
	SRR3591712	Green floral bud	41.145
	SRR3591713	Yellow flower	13.307
SRP173429	SRR8316895	Juvenile bud stage	45.406
	SRR8316896	Juvenile bud stage	45.624
	SRR8316897	Juvenile bud stage	29.043
	SRR8316894	Third green stage	19.001
	SRR8316900	Third green stage	59.699
	SRR8316901	Third green stage	46.141
	SRR8316898	Complete white stage	10.920
	SRR8316899	Complete white stage	41.949
	SRR8316903	Complete white stage	17.797
	SRR8316902	Silver flowering stage	7.595
	SRR8316904	Silver flowering stage	7.452
	SRR8316905	Silver flowering stage	3.507
	SRR8316906	Gold flowering stage	9.689
	SRR8316907	Gold flowering stage	11.227
	SRR8316908	Gold flowering stage	12.205
SRP132670	SRR6706286	Control	80.622
	SRR6706287	Light intensity 50%	74.092
	SRR6706288	Light intensity 20%	79.663
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.816
	CNS0095593	Slightly white alabastrum(diploid) 2	28.256
	CNS0095594	Slightly white alabastrum(diploid) 3	22.304
	CNS0095595	Whole white alabastrum(diploid) 2	28.019
	CNS0095596	Whole white alabastrum(diploid) 3	30.386
	CNS0095597	Whole white alabastrum(diploid) 4	19.688
	CNS0095598	Silvery flower (diploied) 1	55.106
	CNS0095599	Silvery flower (diploied) 2	52.913
	CNS0095600	Silvery flower (diploied) 3	26.926
	CNS0095601	Golden flower (diploid) 1	40.277
	CNS0095602	Golden flower (diploid) 2	39.769
	CNS0095603	Golden flower (diploid) 3	36.304
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.154
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.539
	CNS0095606	Slightly white alabastrum(tetraploid) 3	50.705
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.761
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.574
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.552
	CNS0095610	Silvery flower (tetraploid) 1	21.630
	CNS0095611	Silvery flower (tetraploid) 2	32.271
	CNS0095612	Silvery flower (tetraploid) 3	10.390
	CNS0095613	Golden flower (tetraploid) 1	10.192
	CNS0095614	Golden flower (tetraploid) 2	19.526
	CNS0095615	Golden flower (tetraploid) 3	10.886
CRA001975	CRR073297	Stem 1	99.704
	CRR073298	Stem 2	85.204
	CRR073299	Stem 3	121.391
	CRR073300	Leaf 1	45.685
	CRR073301	Leaf 2	60.550
	CRR073302	Leaf 3	74.427
	CRR073303	Juvenile bud 1	56.292
	CRR073304	Juvenile bud 2	38.360
	CRR073305	Juvenile bud 3	52.564
	CRR073306	Third green 1	8.016
	CRR073307	Third green 2	6.507
	CRR073308	Third green 3	6.696
	CRR073309	Second white 1	10.346
	CRR073310	Second white 2	5.209
	CRR073311	Second white 3	3.577
	CRR073312	Silver flowering 1	4.832
	CRR073313	Silver flowering 2	6.525
	CRR073314	Silver flowering 3	6.184
	CRR073315	Gold flowering 1	250.739
	CRR073316	Gold flowering 2	296.303
	CRR073317	Gold flowering 3	301.377
	CRR073318	Tawny withering 1	55.633
	CRR073319	Tawny withering 2	38.235
	CRR073320	Tawny withering 3	49.063