Gene detail

Detail information of GWHGAAZE004589

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274955.1	3.37297E-85	PREDICTED: transcription factor bHLH30 [Vitis vinifera]
Swissprot	tr\|Q9XEF0\|BH051_ARATH	2E-32	Transcription factor bHLH51
trEMBL	tr\|F6H459\|F6H459_VITVI	1E-85	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47002.1}
TAIR10	AT1G68810.1	4E-26	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	119342460	119346888	+
GWHAAZE00000001	mRNA	119342460	119346888	+
GWHAAZE00000001	exon	119342460	119342738	+
GWHAAZE00000001	exon	119346415	119346888	+
GWHAAZE00000001	CDS	119342460	119342738	+
GWHAAZE00000001	CDS	119346415	119346888	+

Transcript Sequence
>GWHTAAZE004595 ATGACTTGGTATTCTTGCAAATCGAGTAATTTGGGTAATTTTGGAGGGTTTAGTGAGATATGGAGAAGTGGGTCAATGGGGGGTTCACAGTCTTTGGTGTTGGATAGTGATAAAGGAGAACTTGTGAAGGCTAATGGGAAAGTTGAGAAGAAAGGGGAGATTTTAGAGGGGAAAAGTAAGGCCGCTTTGAAGAGTCATAGTGAGGCTGAGAGGAGGAGGAGAGAGAGGATCAATGCTCATCTCCATACGCTTCGTGGGCTTGTACCCTCCACTGAAAAGATGGACAAAGCTGCATTGCTTGCCGAAGTTATTGGGCAGGTGAAACAACTAAAGAACACTGCAAATGAAGCTACTAAAGGTTTAAACATTCCTATGGATGCTGACGAAGTGAAAGTCGAGCCACTTGATGACCGTTTTACTTTCATGGCATCTCTATGTTGTGATTACAAGCCCGACCTCTTGTCCGATATAAAACTAGCTTTTAGTTCCCTTCATCTAAATATCGTGAAGGCAGAAATTTCAACCTTGGGAGGACGAGTGAAGTACGTATTTGTTTTCACCGGCGAGAGGGAAAATTGCAGTGTCAATGCCGAAGTACACCAACTTCTCGTGAGTTCGCTTCATCAGGCTTTAAGTTCAATCTTGGATAAGATATCTGTGTCATCCGAGTACTCGCCACGAACAACTCTTCCAAACAAGAAGCAAAGGGTTTCTCTTTCTGGTGCCGTTGAGAATGATGTTAATGTCCTTTAA

Network for GWHGAAZE004589

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	65	110	1.90E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.938
	SRR3591706	second leaf	11.167
	SRR3591707	mature leaf	18.711
	SRR3591708	Shoot apex	8.467
	SRR3591709	Stem	17.268
	SRR3591710	White floral bud	9.207
	SRR3591711	White flower	21.050
	SRR3591712	Green floral bud	9.170
	SRR3591713	Yellow flower	23.828
SRP173429	SRR8316895	Juvenile bud stage	7.692
	SRR8316896	Juvenile bud stage	8.481
	SRR8316897	Juvenile bud stage	3.075
	SRR8316894	Third green stage	3.924
	SRR8316900	Third green stage	13.235
	SRR8316901	Third green stage	13.598
	SRR8316898	Complete white stage	3.089
	SRR8316899	Complete white stage	12.129
	SRR8316903	Complete white stage	5.673
	SRR8316902	Silver flowering stage	10.777
	SRR8316904	Silver flowering stage	10.249
	SRR8316905	Silver flowering stage	4.816
	SRR8316906	Gold flowering stage	32.991
	SRR8316907	Gold flowering stage	24.984
	SRR8316908	Gold flowering stage	32.256
SRP132670	SRR6706286	Control	9.453
	SRR6706287	Light intensity 50%	9.959
	SRR6706288	Light intensity 20%	10.744
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.161
	CNS0095593	Slightly white alabastrum(diploid) 2	9.576
	CNS0095594	Slightly white alabastrum(diploid) 3	8.189
	CNS0095595	Whole white alabastrum(diploid) 2	8.734
	CNS0095596	Whole white alabastrum(diploid) 3	6.783
	CNS0095597	Whole white alabastrum(diploid) 4	9.220
	CNS0095598	Silvery flower (diploied) 1	21.517
	CNS0095599	Silvery flower (diploied) 2	9.129
	CNS0095600	Silvery flower (diploied) 3	11.524
	CNS0095601	Golden flower (diploid) 1	15.100
	CNS0095602	Golden flower (diploid) 2	19.275
	CNS0095603	Golden flower (diploid) 3	16.413
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.222
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.684
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.940
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.787
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.251
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.870
	CNS0095610	Silvery flower (tetraploid) 1	15.226
	CNS0095611	Silvery flower (tetraploid) 2	8.996
	CNS0095612	Silvery flower (tetraploid) 3	4.896
	CNS0095613	Golden flower (tetraploid) 1	16.458
	CNS0095614	Golden flower (tetraploid) 2	18.691
	CNS0095615	Golden flower (tetraploid) 3	6.603
CRA001975	CRR073297	Stem 1	12.340
	CRR073298	Stem 2	10.044
	CRR073299	Stem 3	6.250
	CRR073300	Leaf 1	6.336
	CRR073301	Leaf 2	8.525
	CRR073302	Leaf 3	7.339
	CRR073303	Juvenile bud 1	8.833
	CRR073304	Juvenile bud 2	4.179
	CRR073305	Juvenile bud 3	4.907
	CRR073306	Third green 1	1.980
	CRR073307	Third green 2	1.243
	CRR073308	Third green 3	1.706
	CRR073309	Second white 1	1.868
	CRR073310	Second white 2	2.332
	CRR073311	Second white 3	1.474
	CRR073312	Silver flowering 1	3.002
	CRR073313	Silver flowering 2	2.939
	CRR073314	Silver flowering 3	1.161
	CRR073315	Gold flowering 1	21.611
	CRR073316	Gold flowering 2	14.075
	CRR073317	Gold flowering 3	11.754
	CRR073318	Tawny withering 1	6.912
	CRR073319	Tawny withering 2	12.012
	CRR073320	Tawny withering 3	4.036