Detail information of GWHGAAZE004572


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009603531.10PREDICTED: probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Nicotiana tomentosiformis]
Swissprottr|Q9LRR7|NCED3_ARATH09-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic (Precursor)
trEMBLtr|J7G3X8|J7G3X8_TOBAC09-cis-epoxycarotenoid dioxygenase 3 protein family isoform 2 {ECO:0000313|EMBL:AFP57678.1}
TAIR10AT3G14440.10nine-cis-epoxycarotenoid dioxygenase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene119073078119074610-
GWHAAZE00000001mRNA119073078119074610-
GWHAAZE00000001exon119073274119074610-
GWHAAZE00000001exon119073078119073243-
GWHAAZE00000001CDS119073274119074610-
GWHAAZE00000001CDS119073078119073243-
Transcript Sequence

Network for GWHGAAZE004572

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03055.16RPE65294925.00E-114
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K09840NCED Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE004572.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090100110120130Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.546
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.333
SRR3591709Stem4.925
SRR3591710White floral bud6.716
SRR3591711White flower3.428
SRR3591712Green floral bud0.181
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.720
SRR8316896Juvenile bud stage 0.592
SRR8316897Juvenile bud stage 0.049
SRR8316894Third green stage 0.726
SRR8316900Third green stage 0.551
SRR8316901Third green stage 1.871
SRR8316898Complete white stage 2.841
SRR8316899Complete white stage 6.078
SRR8316903Complete white stage 7.657
SRR8316902Silver flowering stage3.150
SRR8316904Silver flowering stage1.823
SRR8316905Silver flowering stage1.071
SRR8316906Gold flowering stage 0.996
SRR8316907Gold flowering stage 0.754
SRR8316908Gold flowering stage 1.065
SRP132670SRR6706286Control0.723
SRR6706287Light intensity 50%1.963
SRR6706288Light intensity 20%0.830
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.278
CNS0095593Slightly white alabastrum(diploid) 22.030
CNS0095594Slightly white alabastrum(diploid) 33.935
CNS0095595Whole white alabastrum(diploid) 22.853
CNS0095596Whole white alabastrum(diploid) 30.271
CNS0095597Whole white alabastrum(diploid) 45.181
CNS0095598Silvery flower (diploied) 17.542
CNS0095599Silvery flower (diploied) 214.200
CNS0095600Silvery flower (diploied) 34.316
CNS0095601Golden flower (diploid) 14.495
CNS0095602Golden flower (diploid) 24.660
CNS0095603Golden flower (diploid) 34.883
CNS0095604Slightly white alabastrum(tetraploid) 18.183
CNS0095605Slightly white alabastrum(tetraploid) 23.441
CNS0095606Slightly white alabastrum(tetraploid) 312.709
CNS0095607Whole white alabastrum(tetraploid) 18.398
CNS0095608Whole white alabastrum(tetraploid) 20.133
CNS0095609Whole white alabastrum(tetraploid) 30.038
CNS0095610Silvery flower (tetraploid) 10.272
CNS0095611Silvery flower (tetraploid) 23.651
CNS0095612Silvery flower (tetraploid) 35.995
CNS0095613Golden flower (tetraploid) 10.019
CNS0095614Golden flower (tetraploid) 20.035
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.777
CRR073298Stem 23.882
CRR073299Stem 30.995
CRR073300Leaf 10.768
CRR073301Leaf 20.756
CRR073302Leaf 30.496
CRR073303Juvenile bud 10.162
CRR073304Juvenile bud 22.785
CRR073305Juvenile bud 30.760
CRR073306Third green 1122.349
CRR073307Third green 258.590
CRR073308Third green 374.635
CRR073309Second white 117.339
CRR073310Second white 212.607
CRR073311Second white 37.920
CRR073312Silver flowering 15.368
CRR073313Silver flowering 29.007
CRR073314Silver flowering 34.261
CRR073315Gold flowering 10.152
CRR073316Gold flowering 20.327
CRR073317Gold flowering 30.368
CRR073318Tawny withering 10.206
CRR073319Tawny withering 20.506
CRR073320Tawny withering 30.253