Gene detail

Detail information of GWHGAAZE004563

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002306338.1	0	kinase family protein [Populus trichocarpa]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	1E-107	Serine/threonine-protein kinase HT1
trEMBL	tr\|B9H588\|B9H588_POPTR	0	Kinase family protein {ECO:0000313\|EMBL:EEE93334.1}
TAIR10	AT5G58950.1	4E-166	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118916691	118919609	-
GWHAAZE00000001	mRNA	118916691	118919609	-
GWHAAZE00000001	exon	118918743	118919609	-
GWHAAZE00000001	exon	118917732	118918187	-
GWHAAZE00000001	exon	118916691	118917217	-
GWHAAZE00000001	CDS	118918743	118919609	-
GWHAAZE00000001	CDS	118917732	118918187	-
GWHAAZE00000001	CDS	118916924	118917217	-
GWHAAZE00000001	three_prime_UTR	118916691	118916923	-

Transcript Sequence
>GWHTAAZE004569 ATGGAGGAAGAAGCTAATTCTTGGTTAAGGAGAACAAAATTTTCTCACACGATTTACCATAGGTTGGACCCAACAAGATTCCCTTCAATTCCTTTCACCATTCAACCAAATACAAACCCAAATCCTAATTCTGATCCGCAATCCAGACCCTCAACAATTTCAGCACCCAATGCTGCTCAAATCCAGCAAAATCCAGCTAGAAACAAGCATAGAGCTCTATCACCTTTCCCTCGTGCTCAAATTCAACAAAATCCAAATGAAAGCAAGCATAGGGTTCTATCGCCTCTCCCTGTTGCCAAGATTCAGCAAAATCCGCCAAAAAACACGCATAGGGCTCTATCGCCTCTCCCACAAACCAAGCTTTCGGAGACCTTTAAGGAGGCTCGCTCGGACCGGAAGAGATTCTCAACTCCGCACCCACAAAGAAAAGAATCGGAGAAGGGAATTGTGGGCAAGATTTTCCACAGAGATACTCAAGAAAGAAAGGCACCTGGTTTAAAGTGGCCCGTTGATGACAAAAACCCGCTTAAACACTTCTCTTCGATGAAATTCAATGATAGAACAAAAGGGAGGAAGGAGTCGTTGACGTGGACGAAGTACTTTAACAATGGTGGGGGAAGGGTTTCTTCTGTGGAAATATCAGATGATTGTATGGTTGATCTCTCCAAGTTATTCCTCGGTCTGAGGTTTGCTCATGGGGCACATAGTCAACTTTACCATGGTATATACATGGACGAACCTGTTGCAGTGAAAATTATCAGGGTACCAGATGATGACGAAAATGGAGTTCTAACAGCTCGGTTAGAGAGGCAATTCAATAGAGAAGTCACTCTTTTGTCTCGTCTCCACCATCAAAATGTGATTAAGTTCGTTGCGGCATGCAGAAAGCCACCAGTTTTTTGCATTATCACGGAATATCTCCCAGAGGGTTCATTGAGGGCGTACCTTCACAAGCTTGAGCAAAGATCTCTTCCCTTACAAAAACTAGTTACACTAGCTTTAGATATTGCTCGGGGAATTGAATTCATTCACTCGCAAGGTGTTATACACAGGGACCTTAAACCTGAGAATATACTCATTAGTCAAGATTTCAAGCTGAAGATTGCCGATTTTGGAATAGCTTGTGAGGAGGCATACTGTGATTCTCTGGTGGACGACCCGGGTACTTACAGGTGGATGGCACCTGAGATGATCAAACGTAAATCGTATGGCCGGAAGGTGGATGTATATTGCTTTGGACTAATTTTATGGGAAATGGTAACCGGCACTATCCCTTATGAAGATATGTCACCTGTCCAAGCTGCTTTTGCTGTAGTGAATAAGAATTTGAGACCCACTATACCCAGGGACTGCCCACCCGCCATGAGAGCTTTAATAGAGCAATGTTGGTCGTTGCAACCAGAGAAGAGGCCGGAGTTTTGGCAGGTCGTGAAAGTATTAGAGCAGTTCGAGTCTTCACTCGCGTGTGATGGAACATTAAATATGATGATGATACAGCAGAATCTAGGTTTCGAAGATCATAAGAAGGGGCTTGTTCATTGGATTCAAAAGCTTGGATCATCTCCGGTGCATCCGAATTCTTCCTCCTCCTATACACCTAAGCCTAAATTCACGTAAACTTTTTCTCGTGATTTGGCTGCGTTGTATTTTAGTTTTACCAGATCAGAATGTAAATTATACATGAATCTTTCATTGTTTTTCTATAGTTAAATTTTCTGTGAATTAATTGAATTGGATTGGATTTGATTTATAGATCGTAGGTACCCGGGTGAAAATGCACCACATAATTATTAAGTGTGAACACGGATACATTTTTTTTTTTTTAAAATGCTAGAAGTACTTTGATGCAA

Network for GWHGAAZE004563

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	230	480	7.10E-61

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.420
	SRR3591706	second leaf	9.736
	SRR3591707	mature leaf	12.174
	SRR3591708	Shoot apex	18.670
	SRR3591709	Stem	18.097
	SRR3591710	White floral bud	29.071
	SRR3591711	White flower	32.377
	SRR3591712	Green floral bud	27.308
	SRR3591713	Yellow flower	32.401
SRP173429	SRR8316895	Juvenile bud stage	20.691
	SRR8316896	Juvenile bud stage	26.736
	SRR8316897	Juvenile bud stage	11.180
	SRR8316894	Third green stage	9.616
	SRR8316900	Third green stage	23.049
	SRR8316901	Third green stage	25.021
	SRR8316898	Complete white stage	4.705
	SRR8316899	Complete white stage	38.845
	SRR8316903	Complete white stage	8.420
	SRR8316902	Silver flowering stage	6.735
	SRR8316904	Silver flowering stage	5.944
	SRR8316905	Silver flowering stage	3.624
	SRR8316906	Gold flowering stage	15.331
	SRR8316907	Gold flowering stage	10.873
	SRR8316908	Gold flowering stage	18.120
SRP132670	SRR6706286	Control	16.085
	SRR6706287	Light intensity 50%	15.516
	SRR6706288	Light intensity 20%	17.416
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.270
	CNS0095593	Slightly white alabastrum(diploid) 2	20.138
	CNS0095594	Slightly white alabastrum(diploid) 3	16.487
	CNS0095595	Whole white alabastrum(diploid) 2	15.233
	CNS0095596	Whole white alabastrum(diploid) 3	10.588
	CNS0095597	Whole white alabastrum(diploid) 4	14.085
	CNS0095598	Silvery flower (diploied) 1	28.007
	CNS0095599	Silvery flower (diploied) 2	21.586
	CNS0095600	Silvery flower (diploied) 3	16.483
	CNS0095601	Golden flower (diploid) 1	17.574
	CNS0095602	Golden flower (diploid) 2	23.872
	CNS0095603	Golden flower (diploid) 3	23.742
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.996
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.229
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.568
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.665
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.116
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.054
	CNS0095610	Silvery flower (tetraploid) 1	15.300
	CNS0095611	Silvery flower (tetraploid) 2	15.455
	CNS0095612	Silvery flower (tetraploid) 3	16.583
	CNS0095613	Golden flower (tetraploid) 1	14.557
	CNS0095614	Golden flower (tetraploid) 2	14.891
	CNS0095615	Golden flower (tetraploid) 3	27.337
CRA001975	CRR073297	Stem 1	22.886
	CRR073298	Stem 2	19.461
	CRR073299	Stem 3	16.985
	CRR073300	Leaf 1	23.955
	CRR073301	Leaf 2	22.112
	CRR073302	Leaf 3	16.264
	CRR073303	Juvenile bud 1	16.130
	CRR073304	Juvenile bud 2	9.783
	CRR073305	Juvenile bud 3	19.968
	CRR073306	Third green 1	2.607
	CRR073307	Third green 2	3.780
	CRR073308	Third green 3	4.002
	CRR073309	Second white 1	3.282
	CRR073310	Second white 2	3.273
	CRR073311	Second white 3	2.532
	CRR073312	Silver flowering 1	10.582
	CRR073313	Silver flowering 2	10.446
	CRR073314	Silver flowering 3	12.876
	CRR073315	Gold flowering 1	9.259
	CRR073316	Gold flowering 2	9.700
	CRR073317	Gold flowering 3	5.017
	CRR073318	Tawny withering 1	16.972
	CRR073319	Tawny withering 2	18.439
	CRR073320	Tawny withering 3	17.863