Gene detail

Detail information of GWHGAAZE004561

Functional Annotation

Database	Orthologs	Annotation
Nr	AHF22084.1	OSC2 [Artemisia annua]
Swissprot	tr\|Q08IT1\|DADIS_PANGI	Dammarenediol II synthase
trEMBL	tr\|A0A068UWI8\|A0A068UWI8_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_68 {ECO:0000313\|EMBL:CDP12624.1}
TAIR10	AT1G78955.1	camelliol C synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118897427	118902232	+
GWHAAZE00000001	mRNA	118897427	118902232	+
GWHAAZE00000001	exon	118897427	118897800	+
GWHAAZE00000001	exon	118898036	118898224	+
GWHAAZE00000001	exon	118898406	118898495	+
GWHAAZE00000001	exon	118898594	118898788	+
GWHAAZE00000001	exon	118899300	118899384	+
GWHAAZE00000001	exon	118899650	118900005	+
GWHAAZE00000001	exon	118900109	118900342	+
GWHAAZE00000001	exon	118900435	118900557	+
GWHAAZE00000001	exon	118900649	118900747	+
GWHAAZE00000001	exon	118900861	118900920	+
GWHAAZE00000001	exon	118901036	118901082	+
GWHAAZE00000001	exon	118901188	118901331	+
GWHAAZE00000001	exon	118901417	118901594	+
GWHAAZE00000001	exon	118901704	118901784	+
GWHAAZE00000001	exon	118901924	118902007	+
GWHAAZE00000001	exon	118902110	118902232	+
GWHAAZE00000001	five_prime_UTR	118897427	118897599	+
GWHAAZE00000001	CDS	118897600	118897800	+
GWHAAZE00000001	CDS	118898036	118898224	+
GWHAAZE00000001	CDS	118898406	118898495	+
GWHAAZE00000001	CDS	118898594	118898788	+
GWHAAZE00000001	CDS	118899300	118899384	+
GWHAAZE00000001	CDS	118899650	118900005	+
GWHAAZE00000001	CDS	118900109	118900342	+
GWHAAZE00000001	CDS	118900435	118900557	+
GWHAAZE00000001	CDS	118900649	118900747	+
GWHAAZE00000001	CDS	118900861	118900920	+
GWHAAZE00000001	CDS	118901036	118901082	+
GWHAAZE00000001	CDS	118901188	118901331	+
GWHAAZE00000001	CDS	118901417	118901594	+
GWHAAZE00000001	CDS	118901704	118901784	+
GWHAAZE00000001	CDS	118901924	118902007	+
GWHAAZE00000001	CDS	118902110	118902232	+

Transcript Sequence
>GWHTAAZE004567 TCATTCACGTGTGGATAATTAATATTGCGCTATTTATAAATAGCTTAATTAATTTGTTCTATTGCACCATATAAATCTAAAAAGTTCTCCATATTAATTCGACTCATATATAAACTTCAGAGTACGTTACAGCAAGTATAGAATTTGAGTTAGCTGAATCAATTAAGAAGAGAATGTGGAAGCTCAAGGTTGCTGAAGGCCATGGGCCGTACTTGTATAGCACCAACAATTTTGTTGGGAGACAAATCTGGGAGTTCGACCCCGAAGCTGGTACCCCTGAAGAGAGAGAAGAGGTTGACAAAGCTCGCGAGTATTACCGGAATAACCGTAGACAGGGAGTTCATCCCTGTGGTGATATGATCATGAGGATGCAGCTTATCAAAGAAAGTGGAATTGATCTTATGAGCATACCACCGGTGAGACTAGGAGAAAATGAAGAGGTGAACTACGAAGCAGTTACAACCACGGTGAAGAAAGCTCTTCGATTGAATCGTGCAATTCAAGCACACGATGGTCACTGGCCGGCTGAAAACGCAGGCCCAATGTTTTTTACACCACCCCTGATTATTGCCCTGTACATCAGTGGAGCTATCAATACTATTCTAAGACAAGAACACAAGACAGAGATGATTCGCTACATTTACAACCATCAAAACGAGGATGGCGGATGGGGATTCTACATTGAGGGCCACAGCACCATGATTGGCTCGGCACTTAGCTACGTGGCCTTAAGATTGCTAGGGGAAGGGGCATATGGCGGCAATGGTGCCGTTGAGAGGGCCCGCAAGTGGATCCTCGATCATGGAGGTGCAGGCGGAATACCCTCTTGGGGAAAGACTTATCTCTCGGTTCTTGGGGTGTATGAATGGGAAGGCTGCAACCCACTTCCCCCAGAGTTTTGGCTATTCCCTTCAGCTTTGCCTTACCATCCAGCGAAGATGTGGTGTTACTGCCGAACAACTTATATGCCTATGTCATATTTGTACGGGAAGAAATTTCATGGACCAATCACTGACCTTGTTCTAGAGTTGAGACAAGAAATTCACCCCATACCATATGACCAAATAAATTGGAATAAACAGCGCCATAATTGTTGTAAAGATGATATGTACTACCCTCATACACGGATACAAGATCTTCTTTGGGACAGCCTTCACTACTTCAGTGAGCCAATTATCAAGCATTGGCCATTCTACAAGCTAAGGGAGAGAGCTCTAAGAAGAGCAGTTGAGTTGATGAAATATGGAGCAGAGGAGAGTAGATACATCACTATCGGATGTGTAGAGAAGAGTTTACAAATGATGTGTTGGTGGGCAGAGAATCCTAACGGTGACGAATTTAAACATCACCTTGCAAGAGTCCCCGATTACTTATGGCTTGCTGAGGATGGAATGAAAATGCAGAGTTTTGGTAGTCAGGTGTGGGATTGTGCTCTTGCAACACAAGCAATTATCGCGAGTAATATGGTTGAGGAATACGGTGATTCTCTTAAAAAGGCGCATTTCTACATAAAAGAATCACAGGTCAAAGAGAATCCATCTGGGGATTTTAGTAGTATGTGCCGTCAATTTACTAAAGGATCGTGGACTTTCTCTGATCAAGATCAAGGTTGGGTTGTCTCGGACTGCACAGCTGAATCACTCAAGTGTCTCCTAATGCTTTCACAAATGCCAACGGAAATTGCCGGAGAAAAGGCTGATGTTGAGCGATTATATGAGGCCGTCAACGTTCTTCTCTACTTACAGAGTCCTGAGAGCGGTGGTTTTGCTATTTGGGAGCCACCAATTCCACAACCATACCTACAGGTATTAAATCCTTCAGAAATTTTTGCTGACATAGTTGTTGAGAAAGAGCATGTCGAGTGCACAGCTTCTATAATCCAAGCTCTGCTAGCGTTCAAACGTTTGCATCCTGGGCATAGAGAGAAAGAAATAGAAGTTGCTGTCACAAAAGCAATACGTTTTCTTGAAGAGAAACAGTGGGCAGACGGTTCATGGTATGGTTACTGGGGAATTTGCTTCCTCTATGGCACATTCTTCGTGCTAGCGGGGTTAGTTTCTGCCGGAAAGACATATAACAACAGTGAAGCAGTTCGTAGAGCTGTTAAATTTTTCCTTTCGACACAAAATGAAGAAGGTGGTTGGGGAGAAAGCATTAAATCATGCCCAAGCGAGAAATTCACACCGCTGGATGGAAATCGTACAAATTTTGTACAAACTTCATGGGCTATGCTAGGGCTTATGTATGGTGGACAGGCTGAGAGAGATCCAGCACCATTACATAAAGCAGCCAAGTTATTGATTAATGCACAGATGGATAATGGAGATTTCCCTCAACAGGAAATTACTGGAGTGTACATGAAGAACTGTATGCTGCATTACGCAGAATACAGGAACGTTTTTCCACTTTGGGCACTGGGAGAGTATCGCAAACGCGTCTGGTTACCTAACCAAAAGATCTAA

Network for GWHGAAZE004561

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13249.7	SQHop_cyclase_N	101	356	1.30E-36
PF13243.7	SQHop_cyclase_C	414	753	8.80E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15813	LUP4	Biosynthesis of secondary metabolites	map01110
K15813	LUP4	Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0016104	biological_process	triterpenoid biosynthetic process
GO:0005811	cellular_component	lipid droplet
GO:0000250	molecular_function	lanosterol synthase activity
GO:0016866	molecular_function	intramolecular transferase activity
GO:0042300	molecular_function	beta-amyrin synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.172
	SRR3591706	second leaf	0.137
	SRR3591707	mature leaf	1.036
	SRR3591708	Shoot apex	0.432
	SRR3591709	Stem	0.163
	SRR3591710	White floral bud	8.553
	SRR3591711	White flower	10.459
	SRR3591712	Green floral bud	2.109
	SRR3591713	Yellow flower	15.200
SRP173429	SRR8316895	Juvenile bud stage	0.832
	SRR8316896	Juvenile bud stage	4.356
	SRR8316897	Juvenile bud stage	1.802
	SRR8316894	Third green stage	1.788
	SRR8316900	Third green stage	1.033
	SRR8316901	Third green stage	1.610
	SRR8316898	Complete white stage	2.397
	SRR8316899	Complete white stage	7.997
	SRR8316903	Complete white stage	4.885
	SRR8316902	Silver flowering stage	1.562
	SRR8316904	Silver flowering stage	3.432
	SRR8316905	Silver flowering stage	1.438
	SRR8316906	Gold flowering stage	12.552
	SRR8316907	Gold flowering stage	5.369
	SRR8316908	Gold flowering stage	22.753
SRP132670	SRR6706286	Control	5.585
	SRR6706287	Light intensity 50%	3.158
	SRR6706288	Light intensity 20%	1.850
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.744
	CNS0095593	Slightly white alabastrum(diploid) 2	5.361
	CNS0095594	Slightly white alabastrum(diploid) 3	2.654
	CNS0095595	Whole white alabastrum(diploid) 2	5.192
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	5.059
	CNS0095598	Silvery flower (diploied) 1	24.428
	CNS0095599	Silvery flower (diploied) 2	9.039
	CNS0095600	Silvery flower (diploied) 3	4.810
	CNS0095601	Golden flower (diploid) 1	20.706
	CNS0095602	Golden flower (diploid) 2	10.979
	CNS0095603	Golden flower (diploid) 3	10.825
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.883
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.815
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.899
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.369
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.474
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.126
	CNS0095610	Silvery flower (tetraploid) 1	1.986
	CNS0095611	Silvery flower (tetraploid) 2	1.728
	CNS0095612	Silvery flower (tetraploid) 3	2.293
	CNS0095613	Golden flower (tetraploid) 1	4.506
	CNS0095614	Golden flower (tetraploid) 2	9.276
	CNS0095615	Golden flower (tetraploid) 3	0.135
CRA001975	CRR073297	Stem 1	0.676
	CRR073298	Stem 2	1.270
	CRR073299	Stem 3	0.039
	CRR073300	Leaf 1	0.645
	CRR073301	Leaf 2	2.003
	CRR073302	Leaf 3	0.394
	CRR073303	Juvenile bud 1	0.018
	CRR073304	Juvenile bud 2	0.282
	CRR073305	Juvenile bud 3	1.514
	CRR073306	Third green 1	0.302
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.198
	CRR073309	Second white 1	0.783
	CRR073310	Second white 2	0.869
	CRR073311	Second white 3	1.678
	CRR073312	Silver flowering 1	5.441
	CRR073313	Silver flowering 2	3.919
	CRR073314	Silver flowering 3	4.750
	CRR073315	Gold flowering 1	0.240
	CRR073316	Gold flowering 2	0.043
	CRR073317	Gold flowering 3	2.369
	CRR073318	Tawny withering 1	21.734
	CRR073319	Tawny withering 2	31.829
	CRR073320	Tawny withering 3	2.188