Gene detail

Detail information of GWHGAAZE004557

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009779784.1	2.8963E-158	PREDICTED: gibberellin 2-beta-dioxygenase-like [Nicotiana sylvestris]
COG	YP_007565700.1	2E-32	putative oxidoreductase
Swissprot	tr\|Q9XG83\|G2OX_PHACN	2E-147	Gibberellin 2-beta-dioxygenase
trEMBL	tr\|A4URE9\|A4URE9_TOBAC	1E-157	Gibberellin 2-oxidase 5 {ECO:0000313\|EMBL:ABO70986.1}
TAIR10	AT1G30040.1	1E-107	gibberellin 2-oxidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118793746	118796011	+
GWHAAZE00000001	mRNA	118793746	118796011	+
GWHAAZE00000001	exon	118793746	118794152	+
GWHAAZE00000001	exon	118794860	118795202	+
GWHAAZE00000001	exon	118795738	118796011	+
GWHAAZE00000001	CDS	118793746	118794152	+
GWHAAZE00000001	CDS	118794860	118795202	+
GWHAAZE00000001	CDS	118795738	118795989	+
GWHAAZE00000001	three_prime_UTR	118795990	118796011	+

Transcript Sequence
>GWHTAAZE004563 ATGGTGTTCTTATCTCAACAAGTACTTCTTGATATTATCTCTTTCGCCAGACAATTTTACGCAAATTCACCACCTTCCGATGGAATCCCAATAATAGACCTTTCTGCCCCGAATGCAAAGACCCTTGTGGTTGAGGCCTGTGAAGAATTTGGGTTCTTCAAGGTGGTCAACCATGGAGTGTCAATGGAGTTGGTGACACAACTGGAAAGTGAAGCTGTTAAGTTCTTTAATTCATCACAAGATGCTAAAAATAGGGCTGGTCCTCCTAATCCTTTTGGGTATGGGAATAAGAGTATTGGACGTAATGGTGATATGGGTTGGGTTGAATACCTTCTCTTTAGCACCCACCCTGATCTCATTACCCAGAAATCTCTCTCCATTTCCCCTGAAAACCCTGAACTTTTCAGTTCATTGGTGAATGAGTATGTAGCAGCAGTGACAAAGACGGCTAGTAAGGTACTTGAACTGATAGCAGATGGGTTGAATATTGAGCCAAGGAATGTGCTGAGCAGATTGGTGAGTGATGAGAGGAGTGACTCCTTTTTCAGGCTCAACCATTATCCACCAAACCCAAGCAGTGATGGGTGTGCGAATATGATTGGATTTGGAGAACACACAGACCCACAGATAATATCACTGGTGAGGTCTAACAACACATCTGGCCTTGAAATCTCTCTCAAGGATGGCACATGGCTCCCAGTCCCACCTGATCCCTTCTCCTTTTTCGTCAATGTTGATGACTGCTTGCAGGTGATGACAAATGGGAGGTTTAGGAGCGTAAAGCACAGAGTTGTGGCAGAAAGTTCAGCACCAAGAATGTCAATGATCTACTTTGGAGGTCCACCTCTAACTGAAAAGATAGCAACTTTACCATCATTGCTGGAAGGAGGAGAAAAAAGTTTGTACAAGGAATTCACTTGGATGGAATACAAGAAGTCCGCTTACAACACTAGGTTGGGTGATAATAGGCTCGCGCTCTTTGAGAAATCTGCTGCCCAGTGATTCTGTCATGTGGTTTGTTTGT

Network for GWHGAAZE004557

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	29	117	2.50E-13
PF03171.21	2OG-FeII_Oxy	179	279	3.30E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04125	E1.14.11.13	Biosynthesis of secondary metabolites	map01110
K04125	E1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.808
	SRR3591706	second leaf	3.820
	SRR3591707	mature leaf	7.111
	SRR3591708	Shoot apex	4.842
	SRR3591709	Stem	14.174
	SRR3591710	White floral bud	0.325
	SRR3591711	White flower	0.204
	SRR3591712	Green floral bud	0.239
	SRR3591713	Yellow flower	0.258
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.061
	SRR8316897	Juvenile bud stage	0.131
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.086
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.276
	SRR8316899	Complete white stage	0.982
	SRR8316903	Complete white stage	0.176
	SRR8316902	Silver flowering stage	0.069
	SRR8316904	Silver flowering stage	0.196
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.033
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.193
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.075
	SRR6706288	Light intensity 20%	0.084
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.270
	CNS0095593	Slightly white alabastrum(diploid) 2	0.002
	CNS0095594	Slightly white alabastrum(diploid) 3	0.416
	CNS0095595	Whole white alabastrum(diploid) 2	0.288
	CNS0095596	Whole white alabastrum(diploid) 3	0.102
	CNS0095597	Whole white alabastrum(diploid) 4	0.299
	CNS0095598	Silvery flower (diploied) 1	0.179
	CNS0095599	Silvery flower (diploied) 2	0.002
	CNS0095600	Silvery flower (diploied) 3	0.223
	CNS0095601	Golden flower (diploid) 1	0.075
	CNS0095602	Golden flower (diploid) 2	0.202
	CNS0095603	Golden flower (diploid) 3	0.075
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.230
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.145
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.380
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.835
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.006
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.002
	CNS0095613	Golden flower (tetraploid) 1	0.219
	CNS0095614	Golden flower (tetraploid) 2	0.345
	CNS0095615	Golden flower (tetraploid) 3	0.579
CRA001975	CRR073297	Stem 1	0.082
	CRR073298	Stem 2	0.127
	CRR073299	Stem 3	0.203
	CRR073300	Leaf 1	0.171
	CRR073301	Leaf 2	0.166
	CRR073302	Leaf 3	0.177
	CRR073303	Juvenile bud 1	0.124
	CRR073304	Juvenile bud 2	0.042
	CRR073305	Juvenile bud 3	0.882
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.303
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.099
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.177
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.133
	CRR073315	Gold flowering 1	2.280
	CRR073316	Gold flowering 2	4.101
	CRR073317	Gold flowering 3	2.987
	CRR073318	Tawny withering 1	1.259
	CRR073319	Tawny withering 2	6.178
	CRR073320	Tawny withering 3	1.346