Detail information of GWHGAAZE004550


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010243801.13.3236E-101PREDICTED: 40S ribosomal protein S14-like [Nelumbo nucifera]
COGYP_686965.16E-5130S ribosomal protein S11P
Swissprottr|P42036|RS143_ARATH4E-9240S ribosomal protein S14-3
trEMBLtr|A0A059CDE6|A0A059CDE6_EUCGR2E-101Uncharacterized protein {ECO:0000313|EMBL:KCW75925.1}
TAIR10AT3G52580.18E-64Ribosomal protein S11 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene118639080118640356-
GWHAAZE00000001mRNA118639080118640356-
GWHAAZE00000001exon118639080118639147-
GWHAAZE00000001exon118639408118639537-
GWHAAZE00000001exon118639843118639928-
GWHAAZE00000001exon118640101118640146-
GWHAAZE00000001exon118640225118640356-
GWHAAZE00000001CDS118640225118640356-
GWHAAZE00000001CDS118640101118640146-
GWHAAZE00000001CDS118639843118639928-
GWHAAZE00000001CDS118639408118639537-
GWHAAZE00000001CDS118639080118639147-
Transcript Sequence

Network for GWHGAAZE004550

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00411.20Ribosomal_S11311493.20E-48
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02955RP-S14e, RPS14 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf469.224
SRR3591706second leaf122.040
SRR3591707mature leaf62.671
SRR3591708Shoot apex540.463
SRR3591709Stem199.975
SRR3591710White floral bud187.498
SRR3591711White flower268.677
SRR3591712Green floral bud448.288
SRR3591713Yellow flower179.850
SRP173429 SRR8316895Juvenile bud stage 295.430
SRR8316896Juvenile bud stage 429.459
SRR8316897Juvenile bud stage 219.777
SRR8316894Third green stage 175.430
SRR8316900Third green stage 728.087
SRR8316901Third green stage 638.970
SRR8316898Complete white stage 126.646
SRR8316899Complete white stage 629.912
SRR8316903Complete white stage 161.969
SRR8316902Silver flowering stage105.852
SRR8316904Silver flowering stage86.488
SRR8316905Silver flowering stage43.762
SRR8316906Gold flowering stage 159.359
SRR8316907Gold flowering stage 141.766
SRR8316908Gold flowering stage 201.651
SRP132670SRR6706286Control616.810
SRR6706287Light intensity 50%650.150
SRR6706288Light intensity 20%746.678
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1515.278
CNS0095593Slightly white alabastrum(diploid) 2628.923
CNS0095594Slightly white alabastrum(diploid) 3459.535
CNS0095595Whole white alabastrum(diploid) 2496.354
CNS0095596Whole white alabastrum(diploid) 3599.463
CNS0095597Whole white alabastrum(diploid) 4359.132
CNS0095598Silvery flower (diploied) 1244.869
CNS0095599Silvery flower (diploied) 2206.580
CNS0095600Silvery flower (diploied) 3224.500
CNS0095601Golden flower (diploid) 1173.717
CNS0095602Golden flower (diploid) 2159.232
CNS0095603Golden flower (diploid) 3155.858
CNS0095604Slightly white alabastrum(tetraploid) 1498.894
CNS0095605Slightly white alabastrum(tetraploid) 2490.097
CNS0095606Slightly white alabastrum(tetraploid) 3662.635
CNS0095607Whole white alabastrum(tetraploid) 1284.361
CNS0095608Whole white alabastrum(tetraploid) 2259.448
CNS0095609Whole white alabastrum(tetraploid) 3601.644
CNS0095610Silvery flower (tetraploid) 1249.675
CNS0095611Silvery flower (tetraploid) 2187.650
CNS0095612Silvery flower (tetraploid) 3118.314
CNS0095613Golden flower (tetraploid) 1100.139
CNS0095614Golden flower (tetraploid) 2171.000
CNS0095615Golden flower (tetraploid) 376.964
CRA001975CRR073297Stem 1527.889
CRR073298Stem 2558.068
CRR073299Stem 3638.011
CRR073300Leaf 1627.521
CRR073301Leaf 2669.025
CRR073302Leaf 3867.991
CRR073303Juvenile bud 1700.106
CRR073304Juvenile bud 2592.962
CRR073305Juvenile bud 3608.513
CRR073306Third green 176.912
CRR073307Third green 267.311
CRR073308Third green 381.408
CRR073309Second white 193.520
CRR073310Second white 264.244
CRR073311Second white 334.833
CRR073312Silver flowering 151.749
CRR073313Silver flowering 294.600
CRR073314Silver flowering 366.763
CRR073315Gold flowering 1169.176
CRR073316Gold flowering 2214.676
CRR073317Gold flowering 3182.526
CRR073318Tawny withering 1482.185
CRR073319Tawny withering 2416.281
CRR073320Tawny withering 3467.667