Detail information of GWHGAAZE004545


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001275252.11.2382E-124uncharacterized protein LOC102577837 [Solanum tuberosum]
Swissprottr|Q9ATF5|RL18A_CASSA6E-12160S ribosomal protein L18a
trEMBLtr|K4B846|K4B846_SOLLC5E-12560S ribosomal protein L18a {ECO:0000256|PIRNR:PIRNR002190}
TAIR10AT2G34480.14E-94Ribosomal protein L18ae/LX family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene118597514118600633-
GWHAAZE00000001mRNA118597514118600633-
GWHAAZE00000001exon118600619118600633-
GWHAAZE00000001exon118600369118600484-
GWHAAZE00000001exon118600210118600273-
GWHAAZE00000001exon118597514118597855-
GWHAAZE00000001CDS118600619118600633-
GWHAAZE00000001CDS118600369118600484-
GWHAAZE00000001CDS118600210118600273-
GWHAAZE00000001CDS118597514118597855-
Transcript Sequence

Network for GWHGAAZE004545

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01775.18Ribosomal_L18A71289.00E-55
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02882RP-L18Ae, RPL18A Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf548.242
SRR3591706second leaf243.951
SRR3591707mature leaf124.737
SRR3591708Shoot apex687.720
SRR3591709Stem294.033
SRR3591710White floral bud174.123
SRR3591711White flower238.456
SRR3591712Green floral bud352.201
SRR3591713Yellow flower164.947
SRP173429 SRR8316895Juvenile bud stage 219.086
SRR8316896Juvenile bud stage 301.747
SRR8316897Juvenile bud stage 159.510
SRR8316894Third green stage 120.633
SRR8316900Third green stage 357.571
SRR8316901Third green stage 354.457
SRR8316898Complete white stage 74.823
SRR8316899Complete white stage 318.061
SRR8316903Complete white stage 119.268
SRR8316902Silver flowering stage82.433
SRR8316904Silver flowering stage89.689
SRR8316905Silver flowering stage39.660
SRR8316906Gold flowering stage 142.665
SRR8316907Gold flowering stage 143.312
SRR8316908Gold flowering stage 173.582
SRP132670SRR6706286Control433.627
SRR6706287Light intensity 50%420.737
SRR6706288Light intensity 20%448.059
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1285.470
CNS0095593Slightly white alabastrum(diploid) 2345.974
CNS0095594Slightly white alabastrum(diploid) 3288.845
CNS0095595Whole white alabastrum(diploid) 2221.654
CNS0095596Whole white alabastrum(diploid) 3257.663
CNS0095597Whole white alabastrum(diploid) 4170.313
CNS0095598Silvery flower (diploied) 1150.189
CNS0095599Silvery flower (diploied) 2144.411
CNS0095600Silvery flower (diploied) 3143.186
CNS0095601Golden flower (diploid) 1120.616
CNS0095602Golden flower (diploid) 2130.100
CNS0095603Golden flower (diploid) 3126.677
CNS0095604Slightly white alabastrum(tetraploid) 1274.798
CNS0095605Slightly white alabastrum(tetraploid) 2282.672
CNS0095606Slightly white alabastrum(tetraploid) 3339.142
CNS0095607Whole white alabastrum(tetraploid) 1152.808
CNS0095608Whole white alabastrum(tetraploid) 2133.361
CNS0095609Whole white alabastrum(tetraploid) 3260.673
CNS0095610Silvery flower (tetraploid) 1119.754
CNS0095611Silvery flower (tetraploid) 2111.653
CNS0095612Silvery flower (tetraploid) 384.459
CNS0095613Golden flower (tetraploid) 188.573
CNS0095614Golden flower (tetraploid) 2112.499
CNS0095615Golden flower (tetraploid) 391.378
CRA001975CRR073297Stem 1381.191
CRR073298Stem 2377.303
CRR073299Stem 3352.751
CRR073300Leaf 1357.111
CRR073301Leaf 2399.256
CRR073302Leaf 3392.445
CRR073303Juvenile bud 1349.019
CRR073304Juvenile bud 2266.998
CRR073305Juvenile bud 3266.958
CRR073306Third green 164.465
CRR073307Third green 264.418
CRR073308Third green 374.884
CRR073309Second white 180.087
CRR073310Second white 274.986
CRR073311Second white 352.388
CRR073312Silver flowering 187.837
CRR073313Silver flowering 291.871
CRR073314Silver flowering 379.668
CRR073315Gold flowering 1174.293
CRR073316Gold flowering 2180.626
CRR073317Gold flowering 3144.949
CRR073318Tawny withering 1338.653
CRR073319Tawny withering 2301.399
CRR073320Tawny withering 3390.820