Gene detail

Detail information of GWHGAAZE004530

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010056879.1	2.1407E-159	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Eucalyptus grandis]
Swissprot	tr\|P27493\|CB22_TOBAC	4E-157	Chlorophyll a-b binding protein 21, chloroplastic (Precursor)
trEMBL	tr\|A0A059CBZ6\|A0A059CBZ6_EUCGR	8E-158	Uncharacterized protein {ECO:0000313\|EMBL:KCW75953.1}
TAIR10	AT1G29930.1	2E-117	chlorophyll A/B binding protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118425602	118426398	+
GWHAAZE00000001	mRNA	118425602	118426398	+
GWHAAZE00000001	exon	118425602	118425788	+
GWHAAZE00000001	exon	118425857	118426398	+
GWHAAZE00000001	CDS	118425602	118425788	+
GWHAAZE00000001	CDS	118425857	118426398	+

Transcript Sequence
>GWHTAAZE004536 ATGGCTGCTTCAACAATGGCTCTCTCCTCTCCAGCATTTGCTGGGAAGGCAGTCAAAGTCGCTCCATCAACTTCAAAGCTCTTTGGCAGCGCAAGGGTTTCTATGAGAAAAATTGTCAAAAAGCAAATCTCGTCCAACAGCCCGTGGTACGGCCCGGACCGAGTCAAGTACTTGGGCCCATTCTCTGCTGACCCAGAAACTTTTGCGAAGAACCGTGAGCTTGAGGTGATTCACTGCAGATGGGCCATGCTTGGAGCTCTTGGATGCGTTTTCCCTGAGCTTCTGGCCCGCAATGGTGTGAAGTTTGGTGAAGCCGTGTGGTTCAAGGCCGGAGCTCAAATCTTTAGTGAGGGTGGACTCGACTACTTGGGTAACCCAAGCTTGGTCCATGCTCAGAGCATCTTGGCCATTTGGGCTACACAAGTCATCTTGATGGGTGCTATTGAGGGCTATCGAGTTGCTGGTGGACCGCTCGGTGAGGTGACCGACCCACTTTACCCAGGTGGAAGCTTCGACCCATTAGGACTTGCGGACGATCCAGAGGCTTTTGCTGAACTCAAGGTGAAAGAGATCAAGAATGGCAGATTGGCGATGTTTTCCATGTTTGGGTTCTTTGTTCAAGCCATTGTGACTGGGAAGGGCCCGTTGGAAAACCTTGCCGATCACCTTGCTGATCCCGTCAGCAACAATGCTTGGGCTTATGCCACTAACTTTGTACCCGGAAAGTGA

Network for GWHGAAZE004530

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	61	208	1.40E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08912	LHCB1	Metabolic pathways	map01100
K08912	LHCB1	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	820.720
	SRR3591706	second leaf	2505.819
	SRR3591707	mature leaf	1059.906
	SRR3591708	Shoot apex	1489.615
	SRR3591709	Stem	512.408
	SRR3591710	White floral bud	10.552
	SRR3591711	White flower	16.766
	SRR3591712	Green floral bud	23.258
	SRR3591713	Yellow flower	28.980
SRP173429	SRR8316895	Juvenile bud stage	17.543
	SRR8316896	Juvenile bud stage	15.305
	SRR8316897	Juvenile bud stage	18.254
	SRR8316894	Third green stage	8.264
	SRR8316900	Third green stage	10.816
	SRR8316901	Third green stage	11.856
	SRR8316898	Complete white stage	1.735
	SRR8316899	Complete white stage	9.632
	SRR8316903	Complete white stage	9.846
	SRR8316902	Silver flowering stage	1.305
	SRR8316904	Silver flowering stage	1.894
	SRR8316905	Silver flowering stage	1.167
	SRR8316906	Gold flowering stage	0.348
	SRR8316907	Gold flowering stage	3.870
	SRR8316908	Gold flowering stage	9.222
SRP132670	SRR6706286	Control	14.629
	SRR6706287	Light intensity 50%	12.771
	SRR6706288	Light intensity 20%	14.643
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.086
	CNS0095593	Slightly white alabastrum(diploid) 2	21.354
	CNS0095594	Slightly white alabastrum(diploid) 3	17.555
	CNS0095595	Whole white alabastrum(diploid) 2	14.282
	CNS0095596	Whole white alabastrum(diploid) 3	14.620
	CNS0095597	Whole white alabastrum(diploid) 4	9.232
	CNS0095598	Silvery flower (diploied) 1	70.424
	CNS0095599	Silvery flower (diploied) 2	42.140
	CNS0095600	Silvery flower (diploied) 3	19.956
	CNS0095601	Golden flower (diploid) 1	60.568
	CNS0095602	Golden flower (diploid) 2	54.725
	CNS0095603	Golden flower (diploid) 3	50.606
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.149
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.271
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.971
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.711
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.674
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.465
	CNS0095610	Silvery flower (tetraploid) 1	126.861
	CNS0095611	Silvery flower (tetraploid) 2	456.719
	CNS0095612	Silvery flower (tetraploid) 3	17.663
	CNS0095613	Golden flower (tetraploid) 1	83.474
	CNS0095614	Golden flower (tetraploid) 2	176.785
	CNS0095615	Golden flower (tetraploid) 3	584.266
CRA001975	CRR073297	Stem 1	15.279
	CRR073298	Stem 2	12.164
	CRR073299	Stem 3	26.162
	CRR073300	Leaf 1	5.699
	CRR073301	Leaf 2	5.546
	CRR073302	Leaf 3	5.462
	CRR073303	Juvenile bud 1	1.407
	CRR073304	Juvenile bud 2	0.365
	CRR073305	Juvenile bud 3	1.631
	CRR073306	Third green 1	0.087
	CRR073307	Third green 2	0.235
	CRR073308	Third green 3	0.339
	CRR073309	Second white 1	0.385
	CRR073310	Second white 2	0.318
	CRR073311	Second white 3	0.406
	CRR073312	Silver flowering 1	1.288
	CRR073313	Silver flowering 2	1.063
	CRR073314	Silver flowering 3	0.904
	CRR073315	Gold flowering 1	79.413
	CRR073316	Gold flowering 2	58.797
	CRR073317	Gold flowering 3	85.195
	CRR073318	Tawny withering 1	12.525
	CRR073319	Tawny withering 2	4.066
	CRR073320	Tawny withering 3	17.826