Detail information of GWHGAAZE004504


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004233862.20PREDICTED: ABC transporter B family member 9-like [Solanum lycopersicum]
COGYP_005536092.13E-112multidrug ABC transporter ATPase/permease
Swissprottr|Q9M0M2|AB9B_ARATH0ABC transporter B family member 9
trEMBLtr|K4B8B1|K4B8B1_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g071350.2.1}
TAIR10AT4G18050.10P-glycoprotein 9

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene118126890118132775-
GWHAAZE00000001mRNA118126890118132775-
GWHAAZE00000001exon118126890118127534-
GWHAAZE00000001exon118127622118127885-
GWHAAZE00000001exon118127967118128233-
GWHAAZE00000001exon118128316118128547-
GWHAAZE00000001exon118128640118129294-
GWHAAZE00000001exon118129383118129656-
GWHAAZE00000001exon118129736118130261-
GWHAAZE00000001exon118130655118130893-
GWHAAZE00000001exon118131078118131299-
GWHAAZE00000001exon118131532118131707-
GWHAAZE00000001exon118131866118131920-
GWHAAZE00000001exon118132647118132775-
GWHAAZE00000001CDS118132647118132775-
GWHAAZE00000001CDS118131866118131920-
GWHAAZE00000001CDS118131532118131707-
GWHAAZE00000001CDS118131078118131299-
GWHAAZE00000001CDS118130655118130893-
GWHAAZE00000001CDS118129736118130261-
GWHAAZE00000001CDS118129383118129656-
GWHAAZE00000001CDS118128640118129294-
GWHAAZE00000001CDS118128316118128547-
GWHAAZE00000001CDS118127967118128233-
GWHAAZE00000001CDS118127622118127885-
GWHAAZE00000001CDS118126890118127534-
Transcript Sequence

Network for GWHGAAZE004504

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00664.24ABC_membrane12726.30E-59
PF00005.28ABC_tran3444901.80E-32
PF00664.24ABC_membrane6629341.40E-55
PF00005.28ABC_tran100311521.00E-32
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05658ABCB1, CD243 ABC transporters map02010
Bile secretionmap04976

Gene Ontology

GO term OntologyName
GO:0055085biological_processtransmembrane transport
GO:0016021cellular_componentintegral component of membrane
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
GO:0042626molecular_functionATPase-coupled transmembrane transporter activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.297
SRR3591706second leaf0.290
SRR3591707mature leaf0.000
SRR3591708Shoot apex4.684
SRR3591709Stem0.813
SRR3591710White floral bud0.145
SRR3591711White flower0.119
SRR3591712Green floral bud21.944
SRR3591713Yellow flower0.009
SRP173429 SRR8316895Juvenile bud stage 5.354
SRR8316896Juvenile bud stage 11.459
SRR8316897Juvenile bud stage 9.631
SRR8316894Third green stage 9.852
SRR8316900Third green stage 28.737
SRR8316901Third green stage 30.784
SRR8316898Complete white stage 0.040
SRR8316899Complete white stage 0.933
SRR8316903Complete white stage 0.111
SRR8316902Silver flowering stage0.014
SRR8316904Silver flowering stage0.044
SRR8316905Silver flowering stage0.016
SRR8316906Gold flowering stage 0.020
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.001
SRP132670SRR6706286Control12.961
SRR6706287Light intensity 50%12.353
SRR6706288Light intensity 20%11.001
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.705
CNS0095593Slightly white alabastrum(diploid) 28.060
CNS0095594Slightly white alabastrum(diploid) 37.560
CNS0095595Whole white alabastrum(diploid) 217.507
CNS0095596Whole white alabastrum(diploid) 321.879
CNS0095597Whole white alabastrum(diploid) 415.081
CNS0095598Silvery flower (diploied) 10.862
CNS0095599Silvery flower (diploied) 20.840
CNS0095600Silvery flower (diploied) 30.388
CNS0095601Golden flower (diploid) 10.555
CNS0095602Golden flower (diploid) 20.482
CNS0095603Golden flower (diploid) 30.417
CNS0095604Slightly white alabastrum(tetraploid) 126.770
CNS0095605Slightly white alabastrum(tetraploid) 223.319
CNS0095606Slightly white alabastrum(tetraploid) 32.470
CNS0095607Whole white alabastrum(tetraploid) 134.054
CNS0095608Whole white alabastrum(tetraploid) 233.919
CNS0095609Whole white alabastrum(tetraploid) 330.702
CNS0095610Silvery flower (tetraploid) 10.153
CNS0095611Silvery flower (tetraploid) 20.032
CNS0095612Silvery flower (tetraploid) 30.015
CNS0095613Golden flower (tetraploid) 10.029
CNS0095614Golden flower (tetraploid) 20.014
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 18.422
CRR073298Stem 28.366
CRR073299Stem 33.836
CRR073300Leaf 115.325
CRR073301Leaf 217.680
CRR073302Leaf 39.076
CRR073303Juvenile bud 12.604
CRR073304Juvenile bud 20.249
CRR073305Juvenile bud 30.048
CRR073306Third green 10.033
CRR073307Third green 20.000
CRR073308Third green 30.021
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.034
CRR073313Silver flowering 20.019
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.004
CRR073316Gold flowering 20.002
CRR073317Gold flowering 30.019
CRR073318Tawny withering 10.267
CRR073319Tawny withering 20.066
CRR073320Tawny withering 30.704