Detail information of GWHGAAZE004495


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006585181.10PREDICTED: exonuclease 1-like isoform X1 [Glycine max]
COGYP_001539884.11E-16flap endonuclease-1
Swissprottr|Q8L6Z7|EXO1_ARATH0Exonuclease 1
trEMBLtr|K7L666|K7L666_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G12770.2}
TAIR10AT1G29630.205'-3' exonuclease family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene118054857118060234-
GWHAAZE00000001mRNA118054857118060234-
GWHAAZE00000001exon118054857118055083-
GWHAAZE00000001exon118055578118055629-
GWHAAZE00000001exon118055727118056343-
GWHAAZE00000001exon118056788118056842-
GWHAAZE00000001exon118056947118057107-
GWHAAZE00000001exon118057319118057442-
GWHAAZE00000001exon118057589118057659-
GWHAAZE00000001exon118057756118057945-
GWHAAZE00000001exon118058157118058366-
GWHAAZE00000001exon118058491118058628-
GWHAAZE00000001exon118058797118058920-
GWHAAZE00000001exon118059580118059699-
GWHAAZE00000001exon118060035118060234-
GWHAAZE00000001CDS118060035118060234-
GWHAAZE00000001CDS118059580118059699-
GWHAAZE00000001CDS118058797118058920-
GWHAAZE00000001CDS118058491118058628-
GWHAAZE00000001CDS118058157118058366-
GWHAAZE00000001CDS118057756118057945-
GWHAAZE00000001CDS118057589118057659-
GWHAAZE00000001CDS118057319118057442-
GWHAAZE00000001CDS118056947118057107-
GWHAAZE00000001CDS118056788118056842-
GWHAAZE00000001CDS118055727118056343-
GWHAAZE00000001CDS118055578118055629-
GWHAAZE00000001CDS118054857118055083-
Transcript Sequence

Network for GWHGAAZE004495

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00752.18XPG_N11115.40E-16
PF00867.19XPG_I1532397.10E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10746EXO1 Mismatch repair map03430

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0004518molecular_functionnuclease activity
GO:0003677molecular_functionDNA binding
GO:0035312molecular_function5'-3' exodeoxyribonuclease activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.670
SRR3591706second leaf1.605
SRR3591707mature leaf0.495
SRR3591708Shoot apex10.539
SRR3591709Stem2.186
SRR3591710White floral bud2.663
SRR3591711White flower1.133
SRR3591712Green floral bud2.177
SRR3591713Yellow flower0.165
SRP173429 SRR8316895Juvenile bud stage 1.501
SRR8316896Juvenile bud stage 2.310
SRR8316897Juvenile bud stage 0.886
SRR8316894Third green stage 0.783
SRR8316900Third green stage 1.689
SRR8316901Third green stage 1.213
SRR8316898Complete white stage 0.768
SRR8316899Complete white stage 2.106
SRR8316903Complete white stage 1.332
SRR8316902Silver flowering stage0.630
SRR8316904Silver flowering stage1.252
SRR8316905Silver flowering stage0.399
SRR8316906Gold flowering stage 0.384
SRR8316907Gold flowering stage 0.085
SRR8316908Gold flowering stage 0.207
SRP132670SRR6706286Control0.758
SRR6706287Light intensity 50%0.783
SRR6706288Light intensity 20%0.947
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.048
CNS0095593Slightly white alabastrum(diploid) 23.101
CNS0095594Slightly white alabastrum(diploid) 32.242
CNS0095595Whole white alabastrum(diploid) 21.597
CNS0095596Whole white alabastrum(diploid) 31.087
CNS0095597Whole white alabastrum(diploid) 41.434
CNS0095598Silvery flower (diploied) 11.861
CNS0095599Silvery flower (diploied) 21.445
CNS0095600Silvery flower (diploied) 30.528
CNS0095601Golden flower (diploid) 11.025
CNS0095602Golden flower (diploid) 20.104
CNS0095603Golden flower (diploid) 30.139
CNS0095604Slightly white alabastrum(tetraploid) 12.303
CNS0095605Slightly white alabastrum(tetraploid) 22.793
CNS0095606Slightly white alabastrum(tetraploid) 33.143
CNS0095607Whole white alabastrum(tetraploid) 12.756
CNS0095608Whole white alabastrum(tetraploid) 21.109
CNS0095609Whole white alabastrum(tetraploid) 30.880
CNS0095610Silvery flower (tetraploid) 10.308
CNS0095611Silvery flower (tetraploid) 20.344
CNS0095612Silvery flower (tetraploid) 30.372
CNS0095613Golden flower (tetraploid) 10.183
CNS0095614Golden flower (tetraploid) 20.059
CNS0095615Golden flower (tetraploid) 30.225
CRA001975CRR073297Stem 11.123
CRR073298Stem 20.670
CRR073299Stem 30.841
CRR073300Leaf 10.883
CRR073301Leaf 20.814
CRR073302Leaf 30.250
CRR073303Juvenile bud 10.658
CRR073304Juvenile bud 20.532
CRR073305Juvenile bud 30.322
CRR073306Third green 10.175
CRR073307Third green 20.286
CRR073308Third green 30.066
CRR073309Second white 10.000
CRR073310Second white 20.124
CRR073311Second white 30.023
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.121
CRR073316Gold flowering 20.789
CRR073317Gold flowering 30.168
CRR073318Tawny withering 11.062
CRR073319Tawny withering 21.632
CRR073320Tawny withering 32.161