Gene detail

Detail information of GWHGAAZE004451

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007025341.1	0	Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
COG	YP_004092358.1	9E-27	serine/threonine protein kinase with PASTA sensor(s)
Swissprot	tr\|C0LGU5\|Y5457_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At5g45780 (Precursor)
trEMBL	tr\|A0A061GEW0\|A0A061GEW0_THECC	0	Leucine-rich repeat protein kinase family protein isoform 2 {ECO:0000313\|EMBL:EOY27963.1}
TAIR10	AT5G45780.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	117322664	117329604	+
GWHAAZE00000001	mRNA	117322664	117329604	+
GWHAAZE00000001	exon	117322664	117322775	+
GWHAAZE00000001	exon	117322857	117322989	+
GWHAAZE00000001	exon	117324121	117324192	+
GWHAAZE00000001	exon	117325180	117325323	+
GWHAAZE00000001	exon	117325431	117325502	+
GWHAAZE00000001	exon	117325590	117325649	+
GWHAAZE00000001	exon	117326284	117326357	+
GWHAAZE00000001	exon	117326947	117327285	+
GWHAAZE00000001	exon	117328234	117328625	+
GWHAAZE00000001	exon	117329284	117329604	+
GWHAAZE00000001	CDS	117322664	117322775	+
GWHAAZE00000001	CDS	117322857	117322989	+
GWHAAZE00000001	CDS	117324121	117324192	+
GWHAAZE00000001	CDS	117325180	117325323	+
GWHAAZE00000001	CDS	117325431	117325502	+
GWHAAZE00000001	CDS	117325590	117325649	+
GWHAAZE00000001	CDS	117326284	117326357	+
GWHAAZE00000001	CDS	117326947	117327285	+
GWHAAZE00000001	CDS	117328234	117328625	+
GWHAAZE00000001	CDS	117329284	117329604	+

Transcript Sequence
>GWHTAAZE004457 ATGATGGGAAGTTTGAAGGTGGGTTTGTGGATAATTCTTTTCTTTTGGGTGGGTATGTTCCGATTTCAAGCTTCCTTCAGTCTTCTGTCTCCAAAGGGTGTAAACTATGAAGTGGCCGCTTTAATGTCTGTGAAGAACAAAATGAAAGATGCATACCACGTGCTTGATGGATGGGATATTAATTCTGTTGATCCTTGTACTTGGAACATGGTTGCTTGTTCTTCCGAAGGATTTGTAATTTCCCTTGAAATGGCTAGTACGGGGTTGTCTGGTATGCTTTCACCAAGTATTGGGAATTTGACCCACCTTCGGACAATGTTACTTCAAAACAATCAAGTATCTGGTCCTATCCCTGCTGAGATTGGAAAGCTTTCAGAGCTACAAACTCTTGACTTGTCGGGTAATCTGTTTGTTGGTGAAATTCCAAGCTCTTTGGGTTTCCTAACTCGTCTAAGTTACTTGAGGCTTAGCCGGAACAAGTTGTCTGGACAAATTCCTAGACCTGTGGCGGACCTTTCAGGGCTTTCATTCTTGGATTTGTCATTCAATAACCTCAGTGGTCCCACTCCCAAAATACTGGCTAAAGACTATAGTATTACAGGGAACAGCTTTCTTTGCTCTTCATCATCCCCACAGATTTGCATGGGTGCTCCTAGACCATTAAATGTGCAGCAAGATTATGAATTTGATATTGGCCATCTAAAGAGGTTTTCCTTCCGCGAACTGCAAATTGCTACGGGAAATTTTAGTTCCAAAAACATATTAGGACAAGGTGGCTTTGGGGTTGTGTATAAAGGTTATCTTCCAAATAGGACGGTTGTGGCGGTCAAAAGACTGAAAGATCCTAATTTCTCCGGGGAAGTTCAGTTTCAAACTGAAGTCGAGATGATAAGCTTGGCTTTGCATAGGAACCTTTTGCGTTTATATGGATTCTGTTTGACATCGAATGAGAGGTTACTTGTTTATCCTTACATGCCACATGGAAGCGTTGCAGATCGCTTGCGAGAAACTGGCCGAGAAAAGCCATGTTTAGACTGGAATAAACGAATGCATATTGCCCTAGGAGCTGCCCGTGGACTATATTACTTACATGAACAGTGTAATCCAAAAATTATCCATAGAGACGTGAAAGCTGCAAACATTTTGCTTGATGAAAGTTTTGAAGCGGTTGTGGGAGATTTTGGTCTTGCTAAGCTATTAGACCGTAGAGATTCACATGTTACAACTGCAGTCCGTGGTACCGTGGGACATATAGCACCCGAGTATCTATCAACTGGACAATCTTCTGAGAAAACCGACGTATTTGGATTTGGGATACTACTTTTAGAACTGTTAACAGGTCAAAAGGCATTAGATGCTGGAAATGGCCAGGTTCAGAAAGGAATGATCCTTGATTGGGTCAAAACTTTGTACGAGGAAAAAAAGGTGGAAGTGCTTGTGGATAAGGACCTCAAGGGTTGCTATAGCGGAGAGGAGCTAGAAAAAACAGTGGAACTTTCTCTGCTTTGCACCCAATCACATCCCAACCTACGGCCAAAGATGTCTGAAGTCTTAAAGGTCTTGGAAGGTATCACTGGACAGCCTGTGCATTCAGAGGAATCGCAAGCCGGAAACAACTCTTCTGAAGAAAGGAATCATAGTTTCTCTAGGAATTACAGTGGTGCCCATGGGGATTCTTCATTCATTATCGAGGCTATGGAGCTCTCTGGTCCCCGATGA

Network for GWHGAAZE004451

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	35	74	2.20E-08
PF00069.26	Pkinase	250	519	4.90E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-II

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.907
	SRR3591706	second leaf	0.800
	SRR3591707	mature leaf	0.032
	SRR3591708	Shoot apex	4.573
	SRR3591709	Stem	1.182
	SRR3591710	White floral bud	0.847
	SRR3591711	White flower	0.625
	SRR3591712	Green floral bud	0.395
	SRR3591713	Yellow flower	0.898
SRP173429	SRR8316895	Juvenile bud stage	0.672
	SRR8316896	Juvenile bud stage	0.223
	SRR8316897	Juvenile bud stage	0.307
	SRR8316894	Third green stage	0.166
	SRR8316900	Third green stage	0.180
	SRR8316901	Third green stage	0.250
	SRR8316898	Complete white stage	0.255
	SRR8316899	Complete white stage	1.851
	SRR8316903	Complete white stage	0.236
	SRR8316902	Silver flowering stage	0.164
	SRR8316904	Silver flowering stage	0.182
	SRR8316905	Silver flowering stage	0.112
	SRR8316906	Gold flowering stage	0.520
	SRR8316907	Gold flowering stage	0.104
	SRR8316908	Gold flowering stage	0.100
SRP132670	SRR6706286	Control	0.091
	SRR6706287	Light intensity 50%	0.091
	SRR6706288	Light intensity 20%	0.152
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.433
	CNS0095593	Slightly white alabastrum(diploid) 2	0.445
	CNS0095594	Slightly white alabastrum(diploid) 3	0.293
	CNS0095595	Whole white alabastrum(diploid) 2	0.413
	CNS0095596	Whole white alabastrum(diploid) 3	0.099
	CNS0095597	Whole white alabastrum(diploid) 4	0.259
	CNS0095598	Silvery flower (diploied) 1	0.240
	CNS0095599	Silvery flower (diploied) 2	1.118
	CNS0095600	Silvery flower (diploied) 3	0.617
	CNS0095601	Golden flower (diploid) 1	0.638
	CNS0095602	Golden flower (diploid) 2	0.142
	CNS0095603	Golden flower (diploid) 3	0.332
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.487
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.127
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.887
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.298
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.132
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.166
	CNS0095610	Silvery flower (tetraploid) 1	0.296
	CNS0095611	Silvery flower (tetraploid) 2	0.168
	CNS0095612	Silvery flower (tetraploid) 3	0.317
	CNS0095613	Golden flower (tetraploid) 1	0.039
	CNS0095614	Golden flower (tetraploid) 2	0.070
	CNS0095615	Golden flower (tetraploid) 3	0.066
CRA001975	CRR073297	Stem 1	0.593
	CRR073298	Stem 2	0.452
	CRR073299	Stem 3	0.995
	CRR073300	Leaf 1	0.443
	CRR073301	Leaf 2	0.189
	CRR073302	Leaf 3	0.104
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.508
	CRR073305	Juvenile bud 3	0.208
	CRR073306	Third green 1	0.034
	CRR073307	Third green 2	0.276
	CRR073308	Third green 3	0.133
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.161
	CRR073312	Silver flowering 1	0.088
	CRR073313	Silver flowering 2	0.095
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.174
	CRR073316	Gold flowering 2	0.365
	CRR073317	Gold flowering 3	0.091
	CRR073318	Tawny withering 1	1.664
	CRR073319	Tawny withering 2	1.548
	CRR073320	Tawny withering 3	2.328