Gene detail

Detail information of GWHGAAZE004438

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009360934.1	0	PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X4 [Pyrus x bretschneideri]
COG	YP_007213298.1	2E-32	serine/threonine protein kinase
Swissprot	tr\|Q93VD3\|CIPKN_ARATH	0	CBL-interacting serine/threonine-protein kinase 23
trEMBL	tr\|D7TKB8\|D7TKB8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30940.3}
TAIR10	AT1G30270.1	0	CBL-interacting protein kinase 23

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	116956741	116961011	-
GWHAAZE00000001	mRNA	116956741	116961011	-
GWHAAZE00000001	exon	116960825	116961011	-
GWHAAZE00000001	exon	116959963	116960025	-
GWHAAZE00000001	exon	116959597	116959668	-
GWHAAZE00000001	exon	116959383	116959494	-
GWHAAZE00000001	exon	116959196	116959272	-
GWHAAZE00000001	exon	116958998	116959051	-
GWHAAZE00000001	exon	116958776	116958901	-
GWHAAZE00000001	exon	116958191	116958280	-
GWHAAZE00000001	exon	116957894	116958013	-
GWHAAZE00000001	exon	116957678	116957803	-
GWHAAZE00000001	exon	116957168	116957284	-
GWHAAZE00000001	exon	116956908	116956964	-
GWHAAZE00000001	exon	116956741	116956821	-
GWHAAZE00000001	five_prime_UTR	116961005	116961011	-
GWHAAZE00000001	CDS	116960825	116961004	-
GWHAAZE00000001	CDS	116959963	116960025	-
GWHAAZE00000001	CDS	116959597	116959668	-
GWHAAZE00000001	CDS	116959383	116959494	-
GWHAAZE00000001	CDS	116959196	116959272	-
GWHAAZE00000001	CDS	116958998	116959051	-
GWHAAZE00000001	CDS	116958776	116958901	-
GWHAAZE00000001	CDS	116958191	116958280	-
GWHAAZE00000001	CDS	116957894	116958013	-
GWHAAZE00000001	CDS	116957678	116957803	-
GWHAAZE00000001	CDS	116957168	116957284	-
GWHAAZE00000001	CDS	116956908	116956964	-
GWHAAZE00000001	CDS	116956741	116956821	-

Transcript Sequence
>GWHTAAZE004444 GAAAGAAATGGCTTCTCGATCAAGCAATAATGCGAAGACGAGAGTAGGTAAGTACGAGCTAGGGCGGACGCTAGGGGAGGGGTCATTTGCAAAAGTGAAGTTTGCGAAGAACGTAGTGACTGGTGAAAATGTGGCTATAAAGATTATGGATAAAGAGAAAGTTCTTAAGCATAAGATGATTGGTCAGATCAAACGGGAAATTTCAACTATGAAATTAATCAGACATCCGAACGTCATTCGCATGTTTGAGGTTATGGCGAGCAAGACAAAGATATACATTGTTTTGGAATTTGTTACCGGTGGTGAACTCTTTGACAAAATTTCTTCTAGATGTAGACTAAAAGAAGATGAAGCAAGAAAGTATTTTCAGCAACTCGTTAATGCAGTGGATTACTGCCATAGCCGAGGTGTCTACCATAGAGATCTCAAGGCGAAGAATCTACTGTTGGATGCAAGTGGAATTCTTAAAGTTTCAGATTTTGGATTGAGTGCACTACCACAGCAAGTTCGAGAAGATGGTTTGCTACACACCACATGTGGAACACCAAATTATGTTGCTCCCGAGGTGATCGACAATAAAGGCTATGATGGCACTAAGGCTGATTTGTGGTCATGTGGTGTAATCCTTTTTGTACTTATGGCAGGTTATTTGCCTTTTGAAGATGCAAACCTAATGGCATTATACAAAAAGATTTTTAAGGCTGATTTCACTTGTCCGCCATGGTTCTCCTCAAGTGCGAAGAAACTGATCAAGAGAATCCTGGATCCTAACCCCCTGACTCGAATCACTATTGCTGAGGTACTCCAGAATGAGTGGTTTAAGAAAGGTTATCAGTCACCTAAGTTTGAATATGAAGATGTTAGTCTCGATGACGTGGATGCTATTTTTAATGAATCAGGGGACTCTCCAAACCTCGTGGTGGAGAGGCGGGAAGAACGATCTGCTGCACCTATCACCATGAATGCTTTCGAACTTATCTCTAAATCACAGGGTCTCAACCTTGGTTCTCTTTTCGAAAAGCAAATGGGTCTTGTTAAACGGGAAACAAGATTTACATCCCAACACCCAGCCAATGAGATAATTTCAAAAATAGAAGAAGCTGCTCTGCCTTTGGGATTCGATGTAAAGAGAAATAACTTCAAGATGAAGCTTCAAGGGGAGAAGACTGGGCGCAAGGGTCACCTATCTGTCTCAACAGAAATTTTTGAGGTGGCCCCATCGCTTTTCATGGTTGAGCTTCGCAAGGCTGGAGGAGATACCCTAGAATTTCACAAGGTATGA

Network for GWHGAAZE004438

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	16	271	7.70E-73
PF03822.15	NAF	316	374	1.60E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CAMKL-CHK1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.164
	SRR3591706	second leaf	3.713
	SRR3591707	mature leaf	0.737
	SRR3591708	Shoot apex	7.367
	SRR3591709	Stem	2.873
	SRR3591710	White floral bud	1.363
	SRR3591711	White flower	2.347
	SRR3591712	Green floral bud	7.359
	SRR3591713	Yellow flower	1.348
SRP173429	SRR8316895	Juvenile bud stage	2.113
	SRR8316896	Juvenile bud stage	4.753
	SRR8316897	Juvenile bud stage	3.709
	SRR8316894	Third green stage	1.886
	SRR8316900	Third green stage	4.400
	SRR8316901	Third green stage	5.060
	SRR8316898	Complete white stage	0.448
	SRR8316899	Complete white stage	2.592
	SRR8316903	Complete white stage	0.420
	SRR8316902	Silver flowering stage	0.538
	SRR8316904	Silver flowering stage	0.635
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.417
	SRR8316907	Gold flowering stage	0.449
	SRR8316908	Gold flowering stage	0.271
SRP132670	SRR6706286	Control	3.092
	SRR6706287	Light intensity 50%	3.021
	SRR6706288	Light intensity 20%	3.642
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.277
	CNS0095593	Slightly white alabastrum(diploid) 2	4.390
	CNS0095594	Slightly white alabastrum(diploid) 3	5.644
	CNS0095595	Whole white alabastrum(diploid) 2	5.361
	CNS0095596	Whole white alabastrum(diploid) 3	6.784
	CNS0095597	Whole white alabastrum(diploid) 4	6.728
	CNS0095598	Silvery flower (diploied) 1	0.163
	CNS0095599	Silvery flower (diploied) 2	0.332
	CNS0095600	Silvery flower (diploied) 3	0.363
	CNS0095601	Golden flower (diploid) 1	0.643
	CNS0095602	Golden flower (diploid) 2	0.403
	CNS0095603	Golden flower (diploid) 3	0.200
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.445
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.265
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.274
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.103
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.658
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.073
	CNS0095610	Silvery flower (tetraploid) 1	0.751
	CNS0095611	Silvery flower (tetraploid) 2	0.281
	CNS0095612	Silvery flower (tetraploid) 3	0.431
	CNS0095613	Golden flower (tetraploid) 1	0.955
	CNS0095614	Golden flower (tetraploid) 2	0.551
	CNS0095615	Golden flower (tetraploid) 3	0.889
CRA001975	CRR073297	Stem 1	4.492
	CRR073298	Stem 2	2.940
	CRR073299	Stem 3	3.909
	CRR073300	Leaf 1	4.941
	CRR073301	Leaf 2	3.967
	CRR073302	Leaf 3	4.638
	CRR073303	Juvenile bud 1	4.750
	CRR073304	Juvenile bud 2	2.446
	CRR073305	Juvenile bud 3	2.716
	CRR073306	Third green 1	0.528
	CRR073307	Third green 2	0.498
	CRR073308	Third green 3	0.251
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.088
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.193
	CRR073317	Gold flowering 3	0.128
	CRR073318	Tawny withering 1	1.175
	CRR073319	Tawny withering 2	0.219
	CRR073320	Tawny withering 3	1.333