Gene detail

Detail information of GWHGAAZE004431

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007024962.1	Auxin response factor 6 isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9FGV1\|ARFH_ARATH	Auxin response factor 8
trEMBL	tr\|A0A061GKH9\|A0A061GKH9_THECC	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT1G30330.1	auxin response factor 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	116886641	116891956	+
GWHAAZE00000001	mRNA	116886641	116891956	+
GWHAAZE00000001	exon	116886641	116886683	+
GWHAAZE00000001	exon	116887154	116887266	+
GWHAAZE00000001	exon	116887500	116887598	+
GWHAAZE00000001	exon	116887676	116887732	+
GWHAAZE00000001	exon	116888037	116888192	+
GWHAAZE00000001	exon	116888286	116888370	+
GWHAAZE00000001	exon	116888537	116888627	+
GWHAAZE00000001	exon	116888840	116889004	+
GWHAAZE00000001	exon	116889085	116889207	+
GWHAAZE00000001	exon	116889289	116889364	+
GWHAAZE00000001	exon	116889488	116889635	+
GWHAAZE00000001	exon	116889819	116890097	+
GWHAAZE00000001	exon	116890272	116890906	+
GWHAAZE00000001	exon	116891083	116891273	+
GWHAAZE00000001	exon	116891746	116891956	+
GWHAAZE00000001	CDS	116886641	116886683	+
GWHAAZE00000001	CDS	116887154	116887266	+
GWHAAZE00000001	CDS	116887500	116887598	+
GWHAAZE00000001	CDS	116887676	116887732	+
GWHAAZE00000001	CDS	116888037	116888192	+
GWHAAZE00000001	CDS	116888286	116888370	+
GWHAAZE00000001	CDS	116888537	116888627	+
GWHAAZE00000001	CDS	116888840	116889004	+
GWHAAZE00000001	CDS	116889085	116889207	+
GWHAAZE00000001	CDS	116889289	116889364	+
GWHAAZE00000001	CDS	116889488	116889635	+
GWHAAZE00000001	CDS	116889819	116890097	+
GWHAAZE00000001	CDS	116890272	116890906	+
GWHAAZE00000001	CDS	116891083	116891273	+
GWHAAZE00000001	CDS	116891746	116891956	+

Transcript Sequence
>GWHTAAZE004437 ATGAGGCTCTCTCCTGCTGGTTTTAATCAGCAGTCTCCTGAAGGGGAGAAGAGATGCCTGAATTCTGAACTTTGGCATGCGTGTGCGGGTCCTCTTGTTTCCCTACCTACTCTTGGAAGCCGCGTGGTATATTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCATCAACGAACAAGGAAGTGGATGCTCACATCCCCAACTATCCAAGCTTACCTCCACAACTCATCTGTCAGCTTCACAATTTGACCATGCATGCTGATGTGGAGACAGATGAGGTTTACGCCCAAATGACCTTGCAACCCCTGAATCCAGAAGAACAAAAGGAGCCCTTCCTTCCAGTAGATATGGGTGTGCCTAGCAAACAGCCAACAAATTATTTCTGTAAAACATTGACAGCGAGTGACACAAGTACACACGGTGGATTCTCAGTTCCACGTCGTGCAGCTGAGAAAGTGTTTCCTCCATTGGACTTCACCCAGCAACCACCGGCTCAAGAGTTAATTGCTAGGGACCTACATGATAATGAATGGAAATTTAGACATATATTTCGTGGCCAACCCAAGAGGCATCTTCTCACTACAGGATGGAGTGTGTTTGTAAGTGCAAAAAGACTTGTTGCTGGTGATTCAGTCCTTTTCATATGGAATGAGAAGAATCAATTGCTTCTTGGTATCCGGCGTGCTAATCGGCCACAAACTGTTATGCCTTCTTCAGTTTTGTCAAGTGACAGCATGCACTTGGGACTTCTTGCTGCCGCAGCACACGCAGCCGCAACAAATAGCCGCTTCACCATATTTTATAATCCAAGGGCTAGTCCATCTGAATTTGTCATACCTCTGGCGAAGTATATTAAAGCAGTCTATCATACTCGTGTTTCTGTTGGCATGCGCTTTCGGATGCTGTTTGAAACAGAAGAATCAAGTGTTCGTCGCTATATGGGCACGATAACTGGCATAAGTGACTTGGATCCTGTTCGGTGGGCAAACTCACATTGGCGCTCCGTGAAGGTTGGCTGGGATGAGTCTACAGCTGGGGAAAGGCAGCCACGAGTTTCCCTATGGGAGATTGAACCATTAACAACATTCCCCATGTATCCCTCCCCCTTCCCCCTCAGACTCAAGCGACCATGGCCACCTGGACTACCCTCATTTAATGGGATGAAGGATGATGATTTGGGAATGAATTCTCCGCTTATGTGGCTCCGTGGAGATAATGGAGATCGTGGAGTCCAAGCTCTTAACTTTCAGGGGATTGGGGTTTCACCCTGGATGCAGCCACGGCTTGACGCTTCCATGCTTGGTATGCAAGGCGATATTTACCAAGCTATGGCTGCTGCCGCACTGCAGGAGATGAGGGCCATAGATCCTTCCAAACAGGCAATGCCATTTATGCAGCAATTTCAACAAGCCCAAAGTCTTCCCAGCAGGTCTGCTGAGCATCAGCACCAGCAATTGGTTGATCATCAGCAGTCACAATCACTGCAAACAATATCTTCCCTGCAACAGCAGAGCTTTTCCGACTCAAATGGAAACCCTATGACCAGTCCTATTGTTTCTCCTCTACAGAGTCTTTTTGGTTCGTTTCCCCAAAATGAAACGCCGCACCTTCTTAATTCACCTAGATCCAGCACCTTACTGACTTCTGTTGGCTGGCCACCAAAGCGAATTGCAGTGGATCAATGTGCAACACCCCAAATGGATCAGTTGGGCCCACTTCATCCACCCATCTCTGAAAATACTGTAGCTTTGCCCCCATTTCCTGGTAGGGAGTGCTTGATTGACCAAGAAGGCGGCAACGATCCGCAGAGCAATCTCTTGTTTGGGGTTAACATAGATTCATCATCTCTACTCATGCAAAATGAGATTTCGAGTCTCAGGGGTGTTGGTAGTGATGGTGATTCGACAAACATACCCTTTGTTTCTTCCAATTACTTGAGCAATACTCCAGGAGGCACTGATTTTTCACTTAATCCGACAATGACACCTTCCAGTTGTATTGATGAATCGGGTTTCTTGCAGCCTCCTGAAAATCTGGGGCACGCAAATCCACCTACCAGAACCTTTGTTAAGGTTCACAAGTCGGGATCCTTCGGGAGGTCACTAGACATAGCGAAGTTCAGCAGCTACAATGAGCTGCGAGGTGAGCTTGCTCAAATGTTTGGGCTTGAAGGCCAATTGGAGGACCCACTGAGATCAGGCTGGCAGCTTGTATTTGTAGACAGGGAGAATGATGTTCTTCTCCTTGGTGATGACCCTTGGCCGGAGTTCGTAAACAGTGTGTGGTGTATAAAGATACTGTCACCGGATGAGGTGCAGCAAATGGGCAAACAGGGTCTAGAGCTTCTAAACTCAGTCCCTGTTCAGAGGCTCTCCAATAATAATAGCACCACCACTTGTGATAACTATGCAAGCCGGCAGGAGTCTAGAAACTTGAGCTCCGGGATTGCTTCTGTGGGGTCCCTTGATTACTGA

Network for GWHGAAZE004431

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	127	228	2.90E-21
PF06507.14	Auxin_resp	253	336	3.20E-34
PF02309.17	AUX_IAA	683	771	1.60E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.072
	SRR3591706	second leaf	29.811
	SRR3591707	mature leaf	23.203
	SRR3591708	Shoot apex	42.157
	SRR3591709	Stem	37.099
	SRR3591710	White floral bud	34.320
	SRR3591711	White flower	97.480
	SRR3591712	Green floral bud	69.761
	SRR3591713	Yellow flower	47.261
SRP173429	SRR8316895	Juvenile bud stage	30.316
	SRR8316896	Juvenile bud stage	35.925
	SRR8316897	Juvenile bud stage	14.008
	SRR8316894	Third green stage	19.341
	SRR8316900	Third green stage	33.232
	SRR8316901	Third green stage	47.978
	SRR8316898	Complete white stage	4.435
	SRR8316899	Complete white stage	67.429
	SRR8316903	Complete white stage	11.412
	SRR8316902	Silver flowering stage	11.470
	SRR8316904	Silver flowering stage	19.503
	SRR8316905	Silver flowering stage	11.383
	SRR8316906	Gold flowering stage	31.414
	SRR8316907	Gold flowering stage	21.365
	SRR8316908	Gold flowering stage	26.205
SRP132670	SRR6706286	Control	79.354
	SRR6706287	Light intensity 50%	79.888
	SRR6706288	Light intensity 20%	90.332
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.560
	CNS0095593	Slightly white alabastrum(diploid) 2	20.044
	CNS0095594	Slightly white alabastrum(diploid) 3	14.683
	CNS0095595	Whole white alabastrum(diploid) 2	17.627
	CNS0095596	Whole white alabastrum(diploid) 3	12.176
	CNS0095597	Whole white alabastrum(diploid) 4	15.946
	CNS0095598	Silvery flower (diploied) 1	36.615
	CNS0095599	Silvery flower (diploied) 2	24.605
	CNS0095600	Silvery flower (diploied) 3	62.199
	CNS0095601	Golden flower (diploid) 1	25.005
	CNS0095602	Golden flower (diploid) 2	62.078
	CNS0095603	Golden flower (diploid) 3	59.055
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.106
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.715
	CNS0095606	Slightly white alabastrum(tetraploid) 3	113.280
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.813
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.862
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.701
	CNS0095610	Silvery flower (tetraploid) 1	60.328
	CNS0095611	Silvery flower (tetraploid) 2	70.047
	CNS0095612	Silvery flower (tetraploid) 3	101.440
	CNS0095613	Golden flower (tetraploid) 1	36.183
	CNS0095614	Golden flower (tetraploid) 2	72.043
	CNS0095615	Golden flower (tetraploid) 3	93.526
CRA001975	CRR073297	Stem 1	94.432
	CRR073298	Stem 2	85.363
	CRR073299	Stem 3	80.939
	CRR073300	Leaf 1	90.905
	CRR073301	Leaf 2	93.433
	CRR073302	Leaf 3	62.361
	CRR073303	Juvenile bud 1	54.839
	CRR073304	Juvenile bud 2	45.806
	CRR073305	Juvenile bud 3	92.745
	CRR073306	Third green 1	48.508
	CRR073307	Third green 2	31.426
	CRR073308	Third green 3	40.403
	CRR073309	Second white 1	78.389
	CRR073310	Second white 2	66.315
	CRR073311	Second white 3	77.501
	CRR073312	Silver flowering 1	64.830
	CRR073313	Silver flowering 2	47.609
	CRR073314	Silver flowering 3	48.320
	CRR073315	Gold flowering 1	9.753
	CRR073316	Gold flowering 2	13.336
	CRR073317	Gold flowering 3	9.407
	CRR073318	Tawny withering 1	26.241
	CRR073319	Tawny withering 2	20.075
	CRR073320	Tawny withering 3	25.100