Gene detail

Detail information of GWHGAAZE004420

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05644.1	0	unnamed protein product [Coffea canephora]
COG	YP_548084.1	1E-21	serine/threonine protein kinase
Swissprot	tr\|O64682\|PID_ARATH	0	Protein kinase PINOID
trEMBL	tr\|A0A068UBT7\|A0A068UBT7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_17 {ECO:0000313\|EMBL:CDP05644.1}
TAIR10	AT2G34650.1	1E-154	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	116707835	116709888	+
GWHAAZE00000001	mRNA	116707835	116709888	+
GWHAAZE00000001	exon	116707835	116708367	+
GWHAAZE00000001	exon	116708874	116709888	+
GWHAAZE00000001	CDS	116707835	116708367	+
GWHAAZE00000001	CDS	116708874	116709627	+
GWHAAZE00000001	three_prime_UTR	116709628	116709888	+

Transcript Sequence
>GWHTAAZE004426 ATGTTAGAATTTCAACGAGATTCAGGTTCAGGTTCCGAAGCCCTCAATTCAAGCCAGAGCTCAATGAGCAGTGATAGTTGCCCTAGCTTCAGCCGTTTATCGTTCGATGCTATCGAACTTCCTTCACTGCATTCCAGTTCGCCGGAGAATCTCATTCTGAAGCCGCACCGGTCCTCGGATTCGACATTCCGGCAGAAGACTGGCCTGAGTTTCCGAGACTTCAGCCTCGTCCGCCAGATCGGCGCCGGCGATATCGGAAAAGTTTACCTGTGCCGGCTCCGTTCCGGCGAGAGCTGTTTCTACGCGATGAAGGTTGTTGATAAGGAAGTTTTGGCTTTGAAGAAGAAGATTCAGAGATCTGAAACGGAGAAGAAGATAATGAAAATGCTTGATCATCCTTTTTTACCTACGCTCTACGCTGAATTCGAAGCCTCTCATTTCTCTTGCGTTGTAATGGAGTACTGTTCCGGAGGCGATTTGCATTCTCTGAGACATAAACAGCCTCATAAACGCTTTTCTCTCAGTTCAGCTAGGTTTTATGCGGCTGAGGTACTAGTAGCCCTCGAGTACCTTCATATGTTGGGAATAATCTACAGAGACCTAAAGCCAGAAAATGTTTTAGTCAGATCGGACGGTCATATCATGCTTACAGACTTTGACCTCTCACTCTGCTCAGATTCAATCGCGGCCGTTGAATCACCTGGCTCGTCTCCAGATTCCTCCTCCTCACCCTCAGTCAAACATAAACAGCCCGTGCCCTTCACGTGCCTCCCCAACCGGATGTTCCGGTCAAGGAAAATCGAAACGACGTCGAATAAACGGATGTTCGTGGCGGAGCCGATCACCGCCCGGTCATGCTCGTTCGTTGGAACACATGAGTACGTGGCCCCAGAGGTTGCCGCCGGGAAGTCCCACGGCAATGCCGTCGACTGGTGGGCCTTTGGGGTATTCATATACGAGATGATCTACGGACAGACACCGTTTGCGGGTGTAACGAACCAAGCTACGCTGCGTAGTATCGTGAAAATGCCCTTAACTTTCCCAACCCACGAGCCAGCAAGCGCGAGTGAAATACACGCGCGCAACTTGATATCCGGGTTGTTGGCGAAAGATCCAAATAGTAGACTCGGGTCAAAGCGCGGGGCGGCGGAGGTTAAGACCCACCCGTTTTTCAAGGGTCTAAACTTCGCACTTGTACGGGGCGTGACCCCACCGGGGATGAACCACAAAATGACGTTAGTTAACGGGAAGCCCGTTAAGAAAATGGCGCCGTTTGACTTTTTTTGACTCGTTAAAGTCAATTTTTTGTCAAGCTACTTAATTATGAGTTACTAATATTTTGTCAAAACTACTTGACTAGGAATCTAATTAGTATGGTGTTGTGTATATACTTGATGTGAGAGTTAGGGTTTATATTTATGGAATTTAGGATATGAGGAGGTCCATAATATGTTCTCCAAATCTATAAAATTTTAACGAATAACAGGTTTTGGCTCCCTTTAGGAGGGAAAAATGAATAAAAGAGGTTTCTTTTTCATATTCAACTAA

Network for GWHGAAZE004420

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	75	222	2.00E-35
PF00069.26	Pkinase	285	391	3.60E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.070
	SRR3591706	second leaf	0.465
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	6.393
	SRR3591709	Stem	0.767
	SRR3591710	White floral bud	12.901
	SRR3591711	White flower	2.196
	SRR3591712	Green floral bud	23.277
	SRR3591713	Yellow flower	0.946
SRP173429	SRR8316895	Juvenile bud stage	6.247
	SRR8316896	Juvenile bud stage	7.024
	SRR8316897	Juvenile bud stage	2.533
	SRR8316894	Third green stage	4.222
	SRR8316900	Third green stage	15.780
	SRR8316901	Third green stage	9.916
	SRR8316898	Complete white stage	4.688
	SRR8316899	Complete white stage	16.684
	SRR8316903	Complete white stage	8.959
	SRR8316902	Silver flowering stage	3.507
	SRR8316904	Silver flowering stage	1.960
	SRR8316905	Silver flowering stage	0.173
	SRR8316906	Gold flowering stage	0.004
	SRR8316907	Gold flowering stage	0.074
	SRR8316908	Gold flowering stage	0.231
SRP132670	SRR6706286	Control	12.005
	SRR6706287	Light intensity 50%	15.276
	SRR6706288	Light intensity 20%	17.743
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.517
	CNS0095593	Slightly white alabastrum(diploid) 2	19.287
	CNS0095594	Slightly white alabastrum(diploid) 3	9.669
	CNS0095595	Whole white alabastrum(diploid) 2	12.451
	CNS0095596	Whole white alabastrum(diploid) 3	17.222
	CNS0095597	Whole white alabastrum(diploid) 4	14.981
	CNS0095598	Silvery flower (diploied) 1	3.863
	CNS0095599	Silvery flower (diploied) 2	2.096
	CNS0095600	Silvery flower (diploied) 3	1.464
	CNS0095601	Golden flower (diploid) 1	2.961
	CNS0095602	Golden flower (diploid) 2	1.743
	CNS0095603	Golden flower (diploid) 3	1.957
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.681
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.423
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.141
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.481
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.777
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.604
	CNS0095610	Silvery flower (tetraploid) 1	0.466
	CNS0095611	Silvery flower (tetraploid) 2	1.789
	CNS0095612	Silvery flower (tetraploid) 3	2.258
	CNS0095613	Golden flower (tetraploid) 1	0.121
	CNS0095614	Golden flower (tetraploid) 2	0.544
	CNS0095615	Golden flower (tetraploid) 3	0.256
CRA001975	CRR073297	Stem 1	42.327
	CRR073298	Stem 2	33.920
	CRR073299	Stem 3	49.089
	CRR073300	Leaf 1	30.416
	CRR073301	Leaf 2	27.805
	CRR073302	Leaf 3	36.594
	CRR073303	Juvenile bud 1	43.328
	CRR073304	Juvenile bud 2	24.117
	CRR073305	Juvenile bud 3	46.677
	CRR073306	Third green 1	20.532
	CRR073307	Third green 2	28.302
	CRR073308	Third green 3	25.641
	CRR073309	Second white 1	2.262
	CRR073310	Second white 2	1.372
	CRR073311	Second white 3	0.339
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.065
	CRR073315	Gold flowering 1	8.473
	CRR073316	Gold flowering 2	6.437
	CRR073317	Gold flowering 3	1.653
	CRR073318	Tawny withering 1	2.511
	CRR073319	Tawny withering 2	2.965
	CRR073320	Tawny withering 3	3.042