Gene detail

Detail information of GWHGAAZE004391

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281743.1	0	PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Vitis vinifera]
Swissprot	tr\|P42698\|DR111_ARATH	7E-168	DNA-damage-repair/toleration protein DRT111, chloroplastic (Precursor)
trEMBL	tr\|F6HLX4\|F6HLX4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55849.1}
TAIR10	AT1G30480.1	4E-107	D111/G-patch domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	116279882	116284116	-
GWHAAZE00000001	mRNA	116279882	116284116	-
GWHAAZE00000001	exon	116279882	116280178	-
GWHAAZE00000001	exon	116282545	116283075	-
GWHAAZE00000001	exon	116283710	116284116	-
GWHAAZE00000001	five_prime_UTR	116284016	116284116	-
GWHAAZE00000001	CDS	116283710	116284015	-
GWHAAZE00000001	CDS	116282545	116283075	-
GWHAAZE00000001	CDS	116279882	116280178	-

Transcript Sequence
>GWHTAAZE004397 CCAAACCCTAATTCCTAGAAATTCAAATCTCCGAATCCCCAAATTTCCAATCACAGGTTCAGTTTTCAAGCTCATCGAACATTCGAACTGATAATTTCACAATGCTCGGTGGATTATACGGAGATCTACCTCCACCTTCATCTACAGATGAAGATAGAACAACAACTCCATCATCCAGTGTGTGGTCAAGCAGTGCTAAAATGGCACCTCCAACGCTCCGCAAGCCAAATTCGGTGTTTGCCCCACCGCAAACGATTCTCAAGCCGCAAAACAAACCGAAAACCCTAATTCCACCGCACCCGAAGGCAATAAGTTCGGTACATACCACGGTGGCGGTTACTAACGAGGGAACTAAGAACCCCAGCTTTCAACCGGCGCTGGTCGGAGTTACGTCGACCGTTATAGAGGAATATGATCCAGCGAGGCCAAATGATTATGAGGAGTATAGGAGGGAGAAGAAGCGGAAGGCGGTGGAGGCGGAGATGAAGAGAGAATTGGAGAAGAGGCGGCAGGAGGAGGAGGAGAGAGATAGGAGGGAGAGAGAGAATGCGGAGAAGGAGAGAGAGAAGGAGTTGAATATATCAGGTGAGGAGGCGTGGAAGCGGAGGGCCGCGATGAGCGGTGCGGTCCCACCTAGGTCACCGTCACCGCCTTTGAGTGGAGATGGATTTACGATAGGAAAGTCGGAGAGTGGTGGATTGGGGGTTGGTGCTGGCGGGAATATGACTGCGGCTCAGAGGATGATGGCGAAGATGGGGTGGAAGCAGGGTCAGGGGCTTGGTAAGCAGGAGCAAGGGATTACAACTCCGTTGATGGCGAAGAAAACAGATAGACGGGCGGGGGTTATTGTAAATGCAAGCGAGAAGCAGCCTGAGAAGAAGGTGAAGAGTGTGAGCATCAATGGTACGCCGACTCGGGTTGTGCTGCTTAGAAACATGGTGGGCCCTGGGGAGGTTGATGACGATCTAGAGGGCGAGGTAGCATCAGAGTGTGCAAAGTATGGGACAGTGACTCGGGTCCTAATATTTGAGATAACAGAGCAAAACTTCCCAGCCGACGAAGCAGTACGAATATTCGTGCAGTTTGAGAGAGGAGCAGAAGCAACCAAAGCACTTATTGACCTTGATGGCCGTTTCTTTGGGGGTAGGGTGGTTCGTGCATCATTCTACGAGGAAGAGCGGTTCAATATGAACGAGTTGGCTCCGATGCCCGGGGAAATCCCTGGGTACTCTTGA

Network for GWHGAAZE004391

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01585.24	G-patch	210	249	7.80E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12840	RBM17, SPF45	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0043484	biological_process	regulation of RNA splicing
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.702
	SRR3591706	second leaf	13.985
	SRR3591707	mature leaf	16.742
	SRR3591708	Shoot apex	20.708
	SRR3591709	Stem	16.843
	SRR3591710	White floral bud	20.122
	SRR3591711	White flower	26.505
	SRR3591712	Green floral bud	19.349
	SRR3591713	Yellow flower	20.226
SRP173429	SRR8316895	Juvenile bud stage	14.165
	SRR8316896	Juvenile bud stage	16.768
	SRR8316897	Juvenile bud stage	9.261
	SRR8316894	Third green stage	6.420
	SRR8316900	Third green stage	23.803
	SRR8316901	Third green stage	23.706
	SRR8316898	Complete white stage	6.979
	SRR8316899	Complete white stage	21.994
	SRR8316903	Complete white stage	15.718
	SRR8316902	Silver flowering stage	10.872
	SRR8316904	Silver flowering stage	16.535
	SRR8316905	Silver flowering stage	8.138
	SRR8316906	Gold flowering stage	25.914
	SRR8316907	Gold flowering stage	33.524
	SRR8316908	Gold flowering stage	26.196
SRP132670	SRR6706286	Control	38.226
	SRR6706287	Light intensity 50%	37.529
	SRR6706288	Light intensity 20%	36.174
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.137
	CNS0095593	Slightly white alabastrum(diploid) 2	19.587
	CNS0095594	Slightly white alabastrum(diploid) 3	13.637
	CNS0095595	Whole white alabastrum(diploid) 2	15.035
	CNS0095596	Whole white alabastrum(diploid) 3	12.383
	CNS0095597	Whole white alabastrum(diploid) 4	12.797
	CNS0095598	Silvery flower (diploied) 1	20.468
	CNS0095599	Silvery flower (diploied) 2	15.579
	CNS0095600	Silvery flower (diploied) 3	21.360
	CNS0095601	Golden flower (diploid) 1	16.915
	CNS0095602	Golden flower (diploid) 2	17.766
	CNS0095603	Golden flower (diploid) 3	18.284
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.312
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.221
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.488
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.505
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.456
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.967
	CNS0095610	Silvery flower (tetraploid) 1	33.475
	CNS0095611	Silvery flower (tetraploid) 2	20.278
	CNS0095612	Silvery flower (tetraploid) 3	18.908
	CNS0095613	Golden flower (tetraploid) 1	21.406
	CNS0095614	Golden flower (tetraploid) 2	30.972
	CNS0095615	Golden flower (tetraploid) 3	15.241
CRA001975	CRR073297	Stem 1	13.503
	CRR073298	Stem 2	13.782
	CRR073299	Stem 3	14.542
	CRR073300	Leaf 1	15.583
	CRR073301	Leaf 2	14.062
	CRR073302	Leaf 3	11.928
	CRR073303	Juvenile bud 1	14.703
	CRR073304	Juvenile bud 2	10.637
	CRR073305	Juvenile bud 3	16.696
	CRR073306	Third green 1	7.347
	CRR073307	Third green 2	6.970
	CRR073308	Third green 3	8.108
	CRR073309	Second white 1	7.690
	CRR073310	Second white 2	11.709
	CRR073311	Second white 3	10.772
	CRR073312	Silver flowering 1	7.945
	CRR073313	Silver flowering 2	8.520
	CRR073314	Silver flowering 3	7.006
	CRR073315	Gold flowering 1	6.293
	CRR073316	Gold flowering 2	11.692
	CRR073317	Gold flowering 3	9.098
	CRR073318	Tawny withering 1	11.786
	CRR073319	Tawny withering 2	7.643
	CRR073320	Tawny withering 3	9.444