Detail information of GWHGAAZE004388


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002523191.10ferredoxin--NADP reductase, putative [Ricinus communis]
COGYP_007044843.19E-99oxidoreductase NAD-binding domain-containing protein
Swissprottr|O04397|FENR2_TOBAC0Ferredoxin--NADP reductase, root-type isozyme, chloroplastic (Precursor)
trEMBLtr|B9SB31|B9SB31_RICCO0Ferredoxin--NADP reductase {ECO:0000256|RuleBase:RU004465}
TAIR10AT4G05390.11E-171root FNR 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene116189009116193285-
GWHAAZE00000001mRNA116189009116193285-
GWHAAZE00000001exon116189009116189508-
GWHAAZE00000001exon116189979116190198-
GWHAAZE00000001exon116191035116191367-
GWHAAZE00000001exon116193126116193182-
GWHAAZE00000001exon116193262116193285-
GWHAAZE00000001CDS116193262116193285-
GWHAAZE00000001CDS116193126116193182-
GWHAAZE00000001CDS116191035116191367-
GWHAAZE00000001CDS116189979116190198-
GWHAAZE00000001CDS116189009116189508-
Transcript Sequence

Network for GWHGAAZE004388

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0254CYTOCHROME_P492_Family CYTOCHROME_P492_Family
GO:0004048 anthranilate phosphoribosyltransferase activity GOslim:molecular_function
GO:0008235 metalloexopeptidase activity GOslim:molecular_function
GO:0004177 aminopeptidase activity GOslim:molecular_function
GO:0000162 tryptophan biosynthetic process GOslim:biological_process
GO:0019538 protein metabolic process GOslim:biological_process
map01100 Metabolic pathways
GO:0005737 cytoplasm GOslim:cellular_component
GO:0016757 transferase activity, transferring glycosyl groups GOslim:molecular_function
GO:0030145 manganese ion binding GOslim:molecular_function
map00195 Photosynthesis
map00400 Phenylalanine, tyrosine and tryptophan biosynthesis
map00480 Glutathione metabolism


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00175.22NAD_binding_12313458.30E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02641petH Metabolic pathways map01100
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE004388.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3050100150200250300350400450500550Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf74.930
SRR3591706second leaf64.990
SRR3591707mature leaf43.857
SRR3591708Shoot apex62.857
SRR3591709Stem80.482
SRR3591710White floral bud166.485
SRR3591711White flower243.307
SRR3591712Green floral bud225.471
SRR3591713Yellow flower252.706
SRP173429 SRR8316895Juvenile bud stage 100.214
SRR8316896Juvenile bud stage 136.310
SRR8316897Juvenile bud stage 65.154
SRR8316894Third green stage 57.561
SRR8316900Third green stage 252.367
SRR8316901Third green stage 265.924
SRR8316898Complete white stage 126.619
SRR8316899Complete white stage 339.503
SRR8316903Complete white stage 143.290
SRR8316902Silver flowering stage87.193
SRR8316904Silver flowering stage86.455
SRR8316905Silver flowering stage44.501
SRR8316906Gold flowering stage 213.478
SRR8316907Gold flowering stage 198.350
SRR8316908Gold flowering stage 186.389
SRP132670SRR6706286Control305.655
SRR6706287Light intensity 50%332.677
SRR6706288Light intensity 20%363.208
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1146.945
CNS0095593Slightly white alabastrum(diploid) 2159.059
CNS0095594Slightly white alabastrum(diploid) 3128.069
CNS0095595Whole white alabastrum(diploid) 2159.864
CNS0095596Whole white alabastrum(diploid) 3118.766
CNS0095597Whole white alabastrum(diploid) 4138.634
CNS0095598Silvery flower (diploied) 1140.875
CNS0095599Silvery flower (diploied) 2141.801
CNS0095600Silvery flower (diploied) 3279.229
CNS0095601Golden flower (diploid) 1115.241
CNS0095602Golden flower (diploid) 2232.349
CNS0095603Golden flower (diploid) 3233.301
CNS0095604Slightly white alabastrum(tetraploid) 1159.868
CNS0095605Slightly white alabastrum(tetraploid) 2151.738
CNS0095606Slightly white alabastrum(tetraploid) 3283.180
CNS0095607Whole white alabastrum(tetraploid) 198.606
CNS0095608Whole white alabastrum(tetraploid) 2113.315
CNS0095609Whole white alabastrum(tetraploid) 3275.755
CNS0095610Silvery flower (tetraploid) 1273.097
CNS0095611Silvery flower (tetraploid) 2314.530
CNS0095612Silvery flower (tetraploid) 3280.712
CNS0095613Golden flower (tetraploid) 1217.543
CNS0095614Golden flower (tetraploid) 2301.092
CNS0095615Golden flower (tetraploid) 3195.169
CRA001975CRR073297Stem 1193.380
CRR073298Stem 2200.710
CRR073299Stem 3221.080
CRR073300Leaf 1310.011
CRR073301Leaf 2288.464
CRR073302Leaf 3374.164
CRR073303Juvenile bud 1443.172
CRR073304Juvenile bud 2501.478
CRR073305Juvenile bud 3417.315
CRR073306Third green 1176.404
CRR073307Third green 2117.327
CRR073308Third green 3140.908
CRR073309Second white 1295.257
CRR073310Second white 2201.963
CRR073311Second white 3163.366
CRR073312Silver flowering 1181.513
CRR073313Silver flowering 2198.458
CRR073314Silver flowering 3158.709
CRR073315Gold flowering 148.416
CRR073316Gold flowering 256.491
CRR073317Gold flowering 361.963
CRR073318Tawny withering 1172.258
CRR073319Tawny withering 2129.687
CRR073320Tawny withering 3165.520