Detail information of GWHGAAZE004387


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010098566.10ADP-ribosylation factor GTPase-activating protein AGD12 [Morus notabilis]
Swissprottr|Q9FVJ3|AGD12_ARATH0ADP-ribosylation factor GTPase-activating protein AGD12
trEMBLtr|W9R7K6|W9R7K6_9ROSA0ADP-ribosylation factor GTPase-activating protein AGD12 {ECO:0000313|EMBL:EXB75226.1}
TAIR10AT4G21160.41E-137Calcium-dependent ARF-type GTPase activating protein family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene116168824116174941-
GWHAAZE00000001mRNA116168824116174941-
GWHAAZE00000001exon116174899116174941-
GWHAAZE00000001exon116173882116173963-
GWHAAZE00000001exon116173002116173077-
GWHAAZE00000001exon116172669116172832-
GWHAAZE00000001exon116172432116172567-
GWHAAZE00000001exon116172069116172185-
GWHAAZE00000001exon116171340116171432-
GWHAAZE00000001exon116170690116170971-
GWHAAZE00000001exon116168824116169252-
GWHAAZE00000001CDS116174899116174941-
GWHAAZE00000001CDS116173882116173963-
GWHAAZE00000001CDS116173002116173077-
GWHAAZE00000001CDS116172669116172832-
GWHAAZE00000001CDS116172432116172567-
GWHAAZE00000001CDS116172069116172185-
GWHAAZE00000001CDS116171340116171432-
GWHAAZE00000001CDS116170690116170971-
GWHAAZE00000001three_prime_UTR116168824116169252-
Transcript Sequence

Network for GWHGAAZE004387

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01412.19ArfGap171328.00E-38
PF00168.31C21752647.10E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12486SMAP Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0005096molecular_functionGTPase activator activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf31.404
SRR3591706second leaf18.741
SRR3591707mature leaf21.627
SRR3591708Shoot apex20.129
SRR3591709Stem28.570
SRR3591710White floral bud30.167
SRR3591711White flower24.973
SRR3591712Green floral bud30.015
SRR3591713Yellow flower27.841
SRP173429 SRR8316895Juvenile bud stage 18.027
SRR8316896Juvenile bud stage 28.957
SRR8316897Juvenile bud stage 16.478
SRR8316894Third green stage 12.258
SRR8316900Third green stage 40.116
SRR8316901Third green stage 33.517
SRR8316898Complete white stage 15.829
SRR8316899Complete white stage 42.280
SRR8316903Complete white stage 23.791
SRR8316902Silver flowering stage13.539
SRR8316904Silver flowering stage20.111
SRR8316905Silver flowering stage9.629
SRR8316906Gold flowering stage 34.817
SRR8316907Gold flowering stage 27.019
SRR8316908Gold flowering stage 40.659
SRP132670SRR6706286Control24.390
SRR6706287Light intensity 50%25.347
SRR6706288Light intensity 20%27.448
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.848
CNS0095593Slightly white alabastrum(diploid) 231.104
CNS0095594Slightly white alabastrum(diploid) 337.102
CNS0095595Whole white alabastrum(diploid) 237.435
CNS0095596Whole white alabastrum(diploid) 338.078
CNS0095597Whole white alabastrum(diploid) 438.642
CNS0095598Silvery flower (diploied) 122.313
CNS0095599Silvery flower (diploied) 221.963
CNS0095600Silvery flower (diploied) 323.997
CNS0095601Golden flower (diploid) 117.792
CNS0095602Golden flower (diploid) 223.024
CNS0095603Golden flower (diploid) 323.445
CNS0095604Slightly white alabastrum(tetraploid) 124.992
CNS0095605Slightly white alabastrum(tetraploid) 229.910
CNS0095606Slightly white alabastrum(tetraploid) 326.452
CNS0095607Whole white alabastrum(tetraploid) 133.597
CNS0095608Whole white alabastrum(tetraploid) 229.880
CNS0095609Whole white alabastrum(tetraploid) 331.196
CNS0095610Silvery flower (tetraploid) 123.486
CNS0095611Silvery flower (tetraploid) 228.197
CNS0095612Silvery flower (tetraploid) 329.965
CNS0095613Golden flower (tetraploid) 120.385
CNS0095614Golden flower (tetraploid) 225.990
CNS0095615Golden flower (tetraploid) 332.010
CRA001975CRR073297Stem 125.354
CRR073298Stem 223.688
CRR073299Stem 320.527
CRR073300Leaf 128.779
CRR073301Leaf 226.504
CRR073302Leaf 327.603
CRR073303Juvenile bud 124.823
CRR073304Juvenile bud 222.083
CRR073305Juvenile bud 319.446
CRR073306Third green 114.593
CRR073307Third green 213.812
CRR073308Third green 314.889
CRR073309Second white 112.586
CRR073310Second white 212.783
CRR073311Second white 312.163
CRR073312Silver flowering 114.077
CRR073313Silver flowering 210.450
CRR073314Silver flowering 36.405
CRR073315Gold flowering 112.365
CRR073316Gold flowering 211.268
CRR073317Gold flowering 39.529
CRR073318Tawny withering 125.293
CRR073319Tawny withering 220.851
CRR073320Tawny withering 326.476