Gene detail

Detail information of GWHGAAZE004364

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002533772.1	0	ATP binding protein, putative [Ricinus communis]
Swissprot	tr\|Q8VYT3\|Y4052_ARATH	2E-32	Probable LRR receptor-like serine/threonine-protein kinase At4g30520 (Precursor)
trEMBL	tr\|B9T6A3\|B9T6A3_RICCO	0	ATP binding protein, putative {ECO:0000313\|EMBL:EEF28617.1}
TAIR10	AT4G20790.1	1E-151	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115860195	115862102	-
GWHAAZE00000001	mRNA	115860195	115862102	-
GWHAAZE00000001	exon	115860195	115860559	-
GWHAAZE00000001	exon	115860857	115862102	-
GWHAAZE00000001	CDS	115860857	115862102	-
GWHAAZE00000001	CDS	115860195	115860559	-

Transcript Sequence
>GWHTAAZE004370 ATGGCTTCCATGCACGCAATATCACTCCTCTTCTTGTCCACCACCACAACTCTAACCCAAATTCCCCCAACTCTCTCATCCACATTACTACAAGACTTAAACAACCTCCATCCTCCACCAGGCTTCAACACCACCCTCACCAAAAACTGCCACCACAACCCCTCTCTCAAATACTGCAACTCCACCCCTTTCAACCTCCCCCAAATCTTCAAATTCACCATTGTCGCCACCCACTTATGCAATGATTCCAACAACCCAAATTGCATCGAATCCTTCCCAAAAATCGACCTCAAAAACTGCCCCAATTTAGCCCCTCTCTATCTCTCCTTCACTTTCTTTTGGATCTACTGTCCCTTAACAATCCTCTCCATAGATCTCTCCAACAATTCTCTCAACCAAAACTTCCCTAAAGAAATTTTCTACTGTTCTCAAATCCAATCCCTCGATTTGAGCCACAATTCCCTTCACGGGGATGTTCCAATTAAGAATTTTTCACTGGTCCCAAATCTTACATTTCTCAATCTTTCATACAATTATTTCTCCGAGAGTAAAATCTCCGATACTCAATTCTTCAAACGATTCAATTCATCAAGTTTTCTTCATTCGGGTCTCGTCCCAGATAACAAGAAATTTAGAATCAGGGCTGTAATATTGCTGATTTTGTTTCCTATCTCTGTTATTATCATGGTGGTTTTATTGGGTTGGCTCTGTTTCTTTCGGCCGGATCTTTTACCTAATCTATTTCGGAGAAACCATAGATTTACACCATCGATTTTAAAGATGGCCACGGGAGGATTTTCAAACAGGAATCTAGTGGGAAGAAGTGGGGTTGTGGATATTTACAGAGGGGAATTGAGGGATGGGAGTGAAGCGAGGATTGAAATTTTTTGGGAAAGTTTGTCAAGGAAAAAACGGAGGGAATTCGTGGAAGAATGTAGGATTATGGTGAAATTGGAGCACAAGAACTTGGTTAGAGTAATGGGTTGGTGTGATGATAGGAAATTGAGGGCTATTGTGGCAGAATGGGTTGGTGAAGAGAGTGTTGAGATGTGGTTGTTGAGGTCAAATCCGCCATGGAAAAAGAGAGTGAAGGTGTTGATGGGTGTAATGGAGGGGATTCGTTATTTGCAAGAGGAATGGCCTGAGGTTGGGTATGATTTGAAGACAAGTAGTGTATTGCTTTCTGAGGAAAGAGACCCATTGATTTCTAGGTTTAGAGTTGATGCTCACAACAGCAGGAGCAAGAAAATATTCAAGTATGGCATTTTTGTATTAGAGATGGTATCGAACAAAAGGCTGCGCGAAGAGTTTGAGAGGGGAGAAGCTGGTTTTCTTGAGTGGGTGAGGATGAATTATCCCGAAAATGTGGAGAAGGTGATCGATGAGAGGATGAAAATGAAGGCGAATACAATCGAACAAGCTAGCGAAGCAATTGAGCTAGGGTTAAAGTGTACAGATTTGTCAGCGGTTCCACATCCAAGTTTTGATCAAATCTACATCATGCTATCAAGAATTTATCGGTCTTGCATGATTTCAACTTCACATGTACATAAGAGATTGCATAAAGAAGGGAAGGAAGGACACAAGCGCAGAGACTCAAGAGGAAGTTAA

Network for GWHGAAZE004364

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	278	403	1.60E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CR4L

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.644
	SRR3591706	second leaf	0.860
	SRR3591707	mature leaf	0.233
	SRR3591708	Shoot apex	0.839
	SRR3591709	Stem	0.586
	SRR3591710	White floral bud	0.662
	SRR3591711	White flower	0.215
	SRR3591712	Green floral bud	1.717
	SRR3591713	Yellow flower	0.239
SRP173429	SRR8316895	Juvenile bud stage	0.209
	SRR8316896	Juvenile bud stage	0.358
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.083
	SRR8316900	Third green stage	0.713
	SRR8316901	Third green stage	0.723
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.241
	SRR6706287	Light intensity 50%	0.180
	SRR6706288	Light intensity 20%	0.170
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.379
	CNS0095593	Slightly white alabastrum(diploid) 2	0.544
	CNS0095594	Slightly white alabastrum(diploid) 3	0.283
	CNS0095595	Whole white alabastrum(diploid) 2	1.356
	CNS0095596	Whole white alabastrum(diploid) 3	2.215
	CNS0095597	Whole white alabastrum(diploid) 4	0.720
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.180
	CNS0095600	Silvery flower (diploied) 3	0.039
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.130
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.908
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.635
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.729
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.568
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.583
	CNS0095610	Silvery flower (tetraploid) 1	0.025
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.021
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.027
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.022
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.376
	CRR073301	Leaf 2	0.458
	CRR073302	Leaf 3	0.156
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.064
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.078
	CRR073307	Third green 2	0.056
	CRR073308	Third green 3	0.037
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.132
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.040
	CRR073320	Tawny withering 3	0.051