Gene detail

Detail information of GWHGAAZE004362

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271235.1	1.9335E-163	PREDICTED: serine/threonine-protein kinase 38-like [Vitis vinifera]
COG	YP_007203500.1	3E-20	serine/threonine protein kinase
Swissprot	tr\|Q9LE81\|IRE_ARATH	2E-56	Probable serine/threonine protein kinase IRE {ECO:0000305}
trEMBL	tr\|D7TKR6\|D7TKR6_VITVI	7E-164	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31088.3}
TAIR10	AT4G14350.2	2E-118	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115759068	115767873	+
GWHAAZE00000001	mRNA	115759068	115767873	+
GWHAAZE00000001	exon	115759068	115759145	+
GWHAAZE00000001	exon	115759361	115759444	+
GWHAAZE00000001	exon	115766724	115766965	+
GWHAAZE00000001	exon	115767131	115767374	+
GWHAAZE00000001	exon	115767562	115767641	+
GWHAAZE00000001	exon	115767717	115767873	+
GWHAAZE00000001	CDS	115759068	115759145	+
GWHAAZE00000001	CDS	115759361	115759444	+
GWHAAZE00000001	CDS	115766724	115766965	+
GWHAAZE00000001	CDS	115767131	115767374	+
GWHAAZE00000001	CDS	115767562	115767641	+
GWHAAZE00000001	CDS	115767717	115767873	+

Transcript Sequence
>GWHTAAZE004368 ATGCGTATTCAAAGACATAAGATGGGAGTTGATGATTTTGAACTTCTAACCATTATAGGAAGGGGAGCATTTGGAGAGGTTAGACTTTGCAGAGAAAAGAGTACCGGCCAAGTGTATGCCATGAAGAAACTCAAGAAATCAGAGATGCTACATAGAGGCCAGGTGGAGCATGTTAAAGCAGAAAGGAACCTTTTAGCTGAGGTTGATAGTACCTGCATTGTTAAGCTGTGTTGTTCATTTCAAGATGAAGACTTTTTGTATCTTATTATGGAATATCTTCCCGGGGGAGACATGATGACATTACTAATGCGCAAGGATACCTTGACTGAGGGTGAGACCAGGTTTTACGTTGGGCAGGCAGTCCTAGCCATTGATTCAATTCACAAACACAACTACATCCACAGGGATATCAAGCCTGACAATTTGCTGCTTGGTCATATGAAGCTTTCGGATTTTGGATTGTGTAAACCCTTGGACTGCAGTAAGTTTCCGGATCTTAGCGATAATAATGGTTATGGAGTTGGAAGGAATTCTAAACCTTCGTCCAAGGGTGATAAGCATCATAATAATCCTCCAACACCAACACCAACACCAACATGGATACAACAGGAACAGTTGTCAGACTGGCAAAAGAACAGAAGAATGTTGGCTTATTCAACTGTTGGAACTCCAGACTACATTGCCCGAGAAGTATTGCCGAAGAAAGGATATGGAAAGGAATGTGACTGGTGGTCTCTAGGGTCAATTATGTATGAGATGCTTGTTGGATATCCACCATTTTATTCTCAAGAACCAATGTCAACGTGCCGAAAGGTTAATGCAAATTTATTTTTAGATTCTCCTTTGGAACTGTTAACAACCTACTTGTCCATAAAGTCATGCTAA

Network for GWHGAAZE004362

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	14	161	6.30E-39
PF00069.26	Pkinase	217	269	7.70E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_NDR

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.115
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.046
	SRR3591708	Shoot apex	0.077
	SRR3591709	Stem	0.107
	SRR3591710	White floral bud	0.105
	SRR3591711	White flower	0.714
	SRR3591712	Green floral bud	0.083
	SRR3591713	Yellow flower	0.129
SRP173429	SRR8316895	Juvenile bud stage	0.346
	SRR8316896	Juvenile bud stage	0.081
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.062
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.028
	SRR8316898	Complete white stage	0.012
	SRR8316899	Complete white stage	0.014
	SRR8316903	Complete white stage	0.064
	SRR8316902	Silver flowering stage	0.033
	SRR8316904	Silver flowering stage	0.006
	SRR8316905	Silver flowering stage	0.016
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.012
	SRR8316908	Gold flowering stage	0.038
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.068
	SRR6706288	Light intensity 20%	0.007
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.019
	CNS0095593	Slightly white alabastrum(diploid) 2	0.045
	CNS0095594	Slightly white alabastrum(diploid) 3	0.036
	CNS0095595	Whole white alabastrum(diploid) 2	0.050
	CNS0095596	Whole white alabastrum(diploid) 3	0.026
	CNS0095597	Whole white alabastrum(diploid) 4	0.026
	CNS0095598	Silvery flower (diploied) 1	0.305
	CNS0095599	Silvery flower (diploied) 2	0.015
	CNS0095600	Silvery flower (diploied) 3	0.071
	CNS0095601	Golden flower (diploid) 1	0.017
	CNS0095602	Golden flower (diploid) 2	0.040
	CNS0095603	Golden flower (diploid) 3	0.014
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.035
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.047
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.024
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.118
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.078
	CNS0095612	Silvery flower (tetraploid) 3	0.023
	CNS0095613	Golden flower (tetraploid) 1	0.039
	CNS0095614	Golden flower (tetraploid) 2	0.122
	CNS0095615	Golden flower (tetraploid) 3	0.041
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.040
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.018
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.066
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.023
	CRR073309	Second white 1	0.060
	CRR073310	Second white 2	0.109
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.057
	CRR073313	Silver flowering 2	0.050
	CRR073314	Silver flowering 3	0.114
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.028
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000