Gene detail

Detail information of GWHGAAZE004359

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271235.1	0	PREDICTED: serine/threonine-protein kinase 38-like [Vitis vinifera]
COG	YP_001511011.1	1E-25	WD-40 repeat-containing serine/threonin protein kinase
Swissprot	tr\|F4J6F6\|IREH1_ARATH	4E-79	Probable serine/threonine protein kinase IREH1 {ECO:0000305}
trEMBL	tr\|D7TKR6\|D7TKR6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31088.3}
TAIR10	AT3G23310.1	0	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115734206	115748961	+
GWHAAZE00000001	mRNA	115734206	115748961	+
GWHAAZE00000001	exon	115734206	115734420	+
GWHAAZE00000001	exon	115735311	115735485	+
GWHAAZE00000001	exon	115735697	115735780	+
GWHAAZE00000001	exon	115742106	115742347	+
GWHAAZE00000001	exon	115742495	115742735	+
GWHAAZE00000001	exon	115742921	115743000	+
GWHAAZE00000001	exon	115743077	115743161	+
GWHAAZE00000001	exon	115743831	115743962	+
GWHAAZE00000001	exon	115744044	115744181	+
GWHAAZE00000001	exon	115746330	115746377	+
GWHAAZE00000001	exon	115747830	115747914	+
GWHAAZE00000001	exon	115748444	115748500	+
GWHAAZE00000001	exon	115748819	115748961	+
GWHAAZE00000001	CDS	115734206	115734420	+
GWHAAZE00000001	CDS	115735311	115735485	+
GWHAAZE00000001	CDS	115735697	115735780	+
GWHAAZE00000001	CDS	115742106	115742347	+
GWHAAZE00000001	CDS	115742495	115742735	+
GWHAAZE00000001	CDS	115742921	115743000	+
GWHAAZE00000001	CDS	115743077	115743161	+
GWHAAZE00000001	CDS	115743831	115743962	+
GWHAAZE00000001	CDS	115744044	115744181	+
GWHAAZE00000001	CDS	115746330	115746377	+
GWHAAZE00000001	CDS	115747830	115747914	+
GWHAAZE00000001	CDS	115748444	115748500	+
GWHAAZE00000001	CDS	115748819	115748961	+

Transcript Sequence
>GWHTAAZE004365 ATGGCTTCTGCCAGAAGTTGGTTTCAAAAATTTCGACACAAAGAGGACAAAGTGAAAGCTGGGCCTACAAGAAACAAAGAAACAGTAAGTACAGTGGAATCCACGATGGAGGAGGTTCCTTCCAATACTACTCAACAGAAGGTTGCTGCTGCAAAGGAGTATATTGAGAATCATTACAAATCTCAGATGAAGTGTTTGCAAGATAGGAAGGACAGACGCTGGATGTTGGAGAGGAAGCTTGCTGATGCAGATGTTAATGAGGAAGACCAAATTAATCTTTTAAAATATTTAGAGAGAAAGGAGACAGAATATATGCGTATTCAAAGACATAAGATGGGAGTTGATGATTTTGAACTTCTAACCATTATAGGAAGGGGAGCATTTGGAGAGGTTAGACTTTGCAGAGAAAAGAGTACCGGTCAAGTGTATGCCATGAAGAAACTCAAGAAATCAGAGATGCTACGTAGAGGCCAGGTGGAACATGTTAAAGCAGAAAGGAACCTTTTAGCTGAGGTTGATAGTACCTGCATTGTTAAGCTGTATTGCTCATTTCAAGATGAAGACTTTTTGTATCTTATTATGGAATATCTTCCCGGGGGAGACATGATGACATTACTAATGCGCAAGGATACCTTGACCGAGGATGAGACCAGGTTTTACGTTGGGCAGGCAGTCCTTGCCATTGATTCAATTCACAAACACAACTACATCCACAGGGATATCAAGCCTGACAATTTGCTGCTTGACCACTATGGTCATATGAAGCTTTCGGATTTTGGATTGTGTAAACCCTTGGACTGCAGTAGCTTTCCGGATCTTAGTGATAATAATGGTTATGGAGTTGGAAGGAATTCTAAACCTTTGTTGGAGGGTGATAGGCATCATAATAATCCACCAACACCAACACGGACGCAACAGGAACAGTTGTTACACTGGCAAAAGAACAGAAGAATGTTGGCTTATTCAACAGTTGGAACTCCCGACTACATTGCCCCAGAAGTATTGCTGAAGAAAGGATATGGAAAGGAATGTGACTGGTGGTCTCTTGGGGCAATTATGTATGAGATGCTTGTTGGATATCCACCATTTTATTCTCAAGAACCAATGTCAACGTGCCGAAAGATTGTAAATTGGAAAACTTACTTAAAATTCCCTGAAGAAGCAAAGCTTTCTATTTACGCTAAAGATCTCATTAGCAGTCTCCTTTGCAATGTCGAGCAGAGGCTTGGAACCAGAGGTGCTCATGAAATTAAAGCACACCGATTTTTTAAAGGTATTCAATGGGATAAGTTATATCAGATGGAAGCTGCTTTTATAACAGAAGTCAATGCGGAGTTAGATACTCAAAACTTTGAGAAGTTTGAAGAGGTTAGAGCCGACGGATTCTTTTTTTTAGCGGCTCCAACTGAAACTACACCAAAACAGGGTCCTTGGAGAAAGATGATTCCATCCCAAGACGCGAACTTTGTAGGCTATACATACAAAAATTACGAAATAGTCAAGGAGCATCACCTGCCTGGTATTGCCGAGTTGAAGAAAAAGAGTACTAAGCTGAAGAGACCATCAGTCAAAGCCTTGTTTGACATGCCCGATTCTCCTGAACCGCTTGTTCCAGGAAGCTTTTTGAACCGTCTACCAACCCAAATAGAGGTCTCAGAAAGCCCTGAGCCCTCACCACGCTATAGTAGACCGTCGCAACACCAACCCCAATCTTTGAGAAGATAA

Network for GWHGAAZE004359

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	118	267	5.70E-42
PF00069.26	Pkinase	320	423	1.30E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_NDR

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.001
	SRR3591706	second leaf	9.412
	SRR3591707	mature leaf	13.120
	SRR3591708	Shoot apex	8.331
	SRR3591709	Stem	22.589
	SRR3591710	White floral bud	18.513
	SRR3591711	White flower	26.453
	SRR3591712	Green floral bud	11.387
	SRR3591713	Yellow flower	32.805
SRP173429	SRR8316895	Juvenile bud stage	8.757
	SRR8316896	Juvenile bud stage	12.617
	SRR8316897	Juvenile bud stage	4.922
	SRR8316894	Third green stage	5.884
	SRR8316900	Third green stage	11.483
	SRR8316901	Third green stage	13.581
	SRR8316898	Complete white stage	11.199
	SRR8316899	Complete white stage	21.218
	SRR8316903	Complete white stage	20.506
	SRR8316902	Silver flowering stage	15.498
	SRR8316904	Silver flowering stage	23.319
	SRR8316905	Silver flowering stage	10.742
	SRR8316906	Gold flowering stage	44.648
	SRR8316907	Gold flowering stage	39.846
	SRR8316908	Gold flowering stage	50.639
SRP132670	SRR6706286	Control	10.093
	SRR6706287	Light intensity 50%	10.170
	SRR6706288	Light intensity 20%	9.327
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.387
	CNS0095593	Slightly white alabastrum(diploid) 2	9.561
	CNS0095594	Slightly white alabastrum(diploid) 3	13.035
	CNS0095595	Whole white alabastrum(diploid) 2	7.504
	CNS0095596	Whole white alabastrum(diploid) 3	7.281
	CNS0095597	Whole white alabastrum(diploid) 4	10.003
	CNS0095598	Silvery flower (diploied) 1	19.814
	CNS0095599	Silvery flower (diploied) 2	12.797
	CNS0095600	Silvery flower (diploied) 3	29.413
	CNS0095601	Golden flower (diploid) 1	17.963
	CNS0095602	Golden flower (diploid) 2	28.523
	CNS0095603	Golden flower (diploid) 3	28.044
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.709
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.526
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.115
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.073
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.189
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.604
	CNS0095610	Silvery flower (tetraploid) 1	25.201
	CNS0095611	Silvery flower (tetraploid) 2	25.257
	CNS0095612	Silvery flower (tetraploid) 3	20.286
	CNS0095613	Golden flower (tetraploid) 1	19.382
	CNS0095614	Golden flower (tetraploid) 2	20.859
	CNS0095615	Golden flower (tetraploid) 3	31.931
CRA001975	CRR073297	Stem 1	14.117
	CRR073298	Stem 2	13.126
	CRR073299	Stem 3	9.303
	CRR073300	Leaf 1	13.818
	CRR073301	Leaf 2	12.254
	CRR073302	Leaf 3	8.939
	CRR073303	Juvenile bud 1	9.672
	CRR073304	Juvenile bud 2	9.271
	CRR073305	Juvenile bud 3	10.926
	CRR073306	Third green 1	8.747
	CRR073307	Third green 2	5.563
	CRR073308	Third green 3	8.374
	CRR073309	Second white 1	10.152
	CRR073310	Second white 2	17.689
	CRR073311	Second white 3	14.227
	CRR073312	Silver flowering 1	16.447
	CRR073313	Silver flowering 2	10.942
	CRR073314	Silver flowering 3	12.367
	CRR073315	Gold flowering 1	7.433
	CRR073316	Gold flowering 2	10.912
	CRR073317	Gold flowering 3	2.926
	CRR073318	Tawny withering 1	14.087
	CRR073319	Tawny withering 2	14.741
	CRR073320	Tawny withering 3	9.612